PFRMAT AL 
TARGET T0057 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0057" has a possible match 
REMARK pdb1ceo       4.732     0.155   -13.657  MOLECULE: CELLULASE CELC; 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1xyz_A     4.194     0.141    13.424  MOLECULE: 1,4-BETA-D-XYLAN-XYLANOHYDROLASE; 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1kaz       3.718     0.129   -14.728  MOLECULE: 70KD HEAT SHOCK COGNATE PROTEIN; 
REMARK                                          SCOP: 4-188: A/B; Ribonuclease H-like motif 
REMARK                                          SCOP: 189-381: A/B; Ribonuclease H-like motif 
REMARK pdb1ais_A     3.661     0.128     4.554  MOLECULE: TATA-BINDING PROTEIN; 
REMARK                                          SCOP: 1-92: A+B; TBP-like 
REMARK                                          SCOP: 93-181: A+B; TBP-like 
REMARK pdb1cfr       3.468     0.123    15.188  MOLECULE: RESTRICTION ENDONUCLEASE; 
REMARK                                          SCOP: A/B; Restriction endonucleases 
REMARK pdb1ghr       3.405     0.121    -0.380  1,3-1,4-BETA-GLUCANASE (E.C.3.2.1.73) 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1gsa       3.273     0.118   -10.954  MOLECULE: GLUTATHIONE SYNTHETASE; 
REMARK                                          SCOP: 1-122: A/B; Biotin carboxylase N-terminal domain-like 
REMARK                                          SCOP: 123-314: A+B; ATP-grasp 
REMARK pdb2abk       3.150     0.115    14.420  MOLECULE: ENDONUCLEASE III; 
REMARK                                          SCOP: Alpha; Endonuclease III 
REMARK pdb1nhp       3.083     0.113     0.515  NADH PEROXIDASE (NPX) (E.C.1.11.1.1) MUTANT WITH CYS 42 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0057        ......MINVA..VNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFI 
REMARK                    #|:|.  | |: : #|::||  | |:|||:|  || #|.. |#| 
REMARK pdb1ceo      MVSFKAGINLGGWISQYQVFSKEHFDTFITEKDIETI..AEAGFDH.VRL 
REMARK  
REMARK t0057        AHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQ 
REMARK               . |  :|:: |:.# :: |. |: |# |#:|||.:|| |  | :      
REMARK pdb1ceo      PFDY..PIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMH..... 
REMARK  
REMARK t0057        YKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSCNTT 
REMARK               |:::        #:# :. | :: || |||   :.| |||      :|| 
REMARK pdb1ceo      .HAPGXXXXXXXXSTLFEDPNQQK.RFVDIW...RFLAKRYIN....ERE 
REMARK  
REMARK t0057        ALLRTICTVNKVSKVEKVRATIVRRAAD..QKEVKKGPINSLVP..DPAT 
REMARK               |: .||:# :| .#|:|.. ||..||:  ||  |: || #  |  :||. 
REMARK pdb1ceo      HIAFELLNQVVEPDSTRWNK.LMLECIKAIREIDSTMWLYIGGNNYNSPD 
REMARK  
REMARK t0057        VPSHHAK.DVNSVIRNL...DIATMAVIAPTTLMHMHFINITLK..DKVE 
REMARK              # :. .. |.:.|| :|   .|. || . : :.  : :||  |:  ..|: 
REMARK pdb1ceo      ELKNLADIDDDYIVYNFHFYNPFFFTHQKAHWSESAMAYNRTVKYPGQYE 
REMARK  
REMARK t0057        K.KDILSVLENTPRIV.LISSKYDAEATAELVEVARDLKRDRND...IPE 
REMARK              . |:|: # | .:.|  . ..::. :: .| |: |..|..:||    |:. 
REMARK pdb1ceo      GIEEFVKNNPKYSFMMELNNLKLNKELLRKDLKPAIEFREKKKCKLYCGE 
REMARK  
REMARK t0057        VMIFSDSIYVKDDEVMLMYAVHQESIVVPENIDAIRAS.....MKLMSAE 
REMARK              ::| .|.    . |:|: || :. ::| # || :  #:     :.||:#: 
REMARK pdb1ceo      FGVIAIA....DLESRIKWHEDYISLLEEYDIGGAVWNYKKMDFEIYNED 
REMARK  
REMARK t0057        DSMRITN..ESLGILKGYLI 
REMARK              : :.|    | |         
REMARK pdb1ceo      RKPVSQELVNILAR...... 
REMARK  
PARENT 1ceo 
M 1  G 7 
I 2  I 8 
N 3  N 9 
V 4  L 10 
A 5  G 11 
V 6  I 14 
N 7  S 15 
G 8  Q 16 
Y 9  Y 17 
G 10  Q 18 
T 11  V 19 
I 12  F 20 
G 13  S 21 
K 14  K 22 
R 15  E 23 
V 16  H 24 
A 17  F 25 
D 18  D 26 
A 19  T 27 
I 20  F 28 
I 21  I 29 
K 22  T 30 
Q 23  E 31 
P 24  K 32 
D 25  D 33 
M 26  I 34 
K 27  E 35 
L 28  T 36 
V 29  I 37 
A 32  A 38 
K 33  E 39 
T 34  A 40 
S 35  G 41 
P 36  F 42 
N 37  D 43 
Y 38  H 44 
A 40  V 45 
F 41  R 46 
I 42  L 47 
A 43  P 48 
H 44  F 49 
R 45  D 50 
R 46  Y 51 
R 49  P 52 
I 50  I 53 
Y 51  I 54 
V 52  E 55 
P 53  S 56 
Q 54  D 57 
Q 55  D 58 
S 56  N 59 
I 57  V 60 
K 58  G 61 
K 59  E 62 
F 60  Y 63 
E 61  K 64 
E 62  E 65 
S 63  D 66 
G 64  G 67 
I 65  L 68 
P 66  S 69 
V 67  Y 70 
A 68  I 71 
G 69  D 72 
T 70  R 73 
V 71  C 74 
E 72  L 75 
D 73  E 76 
L 74  W 77 
I 75  C 78 
K 76  K 79 
T 77  K 80 
S 78  Y 81 
D 79  N 82 
I 80  L 83 
V 81  G 84 
V 82  L 85 
D 83  V 86 
T 84  L 87 
T 85  D 88 
P 86  M 89 
N 87  H 90 
K 94  H 91 
P 95  A 92 
I 96  P 93 
Y 97  G 94 
F 106  S 103 
Q 107  T 104 
G 108  L 105 
G 109  F 106 
E 110  E 107 
K 111  D 108 
A 112  P 109 
E 113  N 110 
V 114  Q 111 
A 115  Q 112 
D 116  K 113 
S 118  R 114 
F 119  F 115 
S 120  V 116 
A 121  D 117 
L 122  I 118 
C 123  W 119 
E 127  R 120 
A 128  F 121 
L 129  L 122 
G 130  A 123 
K 131  K 124 
K 132  R 125 
Y 133  Y 126 
I 134  I 127 
R 135  N 128 
N 140  E 129 
T 141  R 130 
T 142  E 131 
A 143  H 132 
L 144  I 133 
L 145  A 134 
R 146  F 135 
T 147  E 136 
I 148  L 137 
C 149  L 138 
T 150  N 139 
V 151  Q 140 
N 152  V 141 
K 153  V 142 
V 154  E 143 
S 155  P 144 
K 156  D 145 
V 157  S 146 
E 158  T 147 
K 159  R 148 
V 160  W 149 
R 161  N 150 
A 162  K 151 
I 164  L 152 
V 165  M 153 
R 166  L 154 
R 167  E 155 
A 168  C 156 
A 169  I 157 
D 170  K 158 
Q 171  R 161 
K 172  E 162 
E 173  I 163 
V 174  D 164 
K 175  S 165 
K 176  T 166 
G 177  M 167 
P 178  W 168 
I 179  L 169 
N 180  Y 170 
S 181  I 171 
L 182  G 172 
V 183  G 173 
P 184  N 174 
D 185  N 177 
P 186  S 178 
A 187  P 179 
T 188  D 180 
V 189  E 181 
P 190  L 182 
S 191  K 183 
H 192  N 184 
H 193  L 185 
A 194  A 186 
K 195  D 187 
D 196  D 189 
V 197  D 190 
N 198  D 191 
S 199  Y 192 
V 200  I 193 
I 201  V 194 
R 202  Y 195 
N 203  N 196 
L 204  F 197 
D 205  N 201 
I 206  P 202 
A 207  F 203 
T 208  F 204 
M 209  F 205 
A 210  T 206 
V 211  H 207 
I 212  Q 208 
A 213  K 209 
P 214  A 210 
T 215  H 211 
T 216  W 212 
L 217  S 213 
M 218  E 214 
H 219  S 215 
M 220  A 216 
H 221  M 217 
F 222  A 218 
I 223  Y 219 
N 224  N 220 
I 225  R 221 
T 226  T 222 
L 227  V 223 
K 228  K 224 
D 229  G 227 
K 230  Q 228 
V 231  Y 229 
E 232  E 230 
K 233  G 231 
K 234  E 233 
D 235  E 234 
I 236  F 235 
L 237  V 236 
S 238  K 237 
V 239  N 238 
L 240  N 239 
E 241  P 240 
N 242  K 241 
T 243  Y 242 
P 244  S 243 
R 245  F 244 
I 246  M 245 
V 247  M 246 
L 248  L 248 
I 249  N 249 
S 250  N 250 
S 251  L 251 
K 252  K 252 
Y 253  L 253 
D 254  N 254 
A 255  K 255 
E 256  E 256 
A 257  L 257 
T 258  L 258 
A 259  R 259 
E 260  K 260 
L 261  D 261 
V 262  L 262 
E 263  K 263 
V 264  P 264 
A 265  A 265 
R 266  I 266 
D 267  E 267 
L 268  F 268 
K 269  R 269 
R 270  E 270 
D 271  K 271 
R 272  K 272 
N 273  K 273 
D 274  C 274 
I 275  C 278 
P 276  G 279 
E 277  E 280 
V 278  F 281 
M 279  G 282 
I 280  V 283 
F 281  I 284 
S 282  A 285 
D 283  I 286 
S 284  A 287 
D 289  D 288 
D 290  L 289 
E 291  E 290 
V 292  S 291 
M 293  R 292 
L 294  I 293 
M 295  K 294 
Y 296  W 295 
A 297  H 296 
V 298  E 297 
H 299  D 298 
Q 300  Y 299 
E 301  I 300 
S 302  S 301 
I 303  L 302 
V 304  L 303 
V 305  E 304 
P 306  E 305 
E 307  Y 306 
N 308  D 307 
I 309  I 308 
D 310  G 309 
A 311  G 310 
I 312  A 311 
R 313  V 312 
A 314  W 313 
S 315  N 314 
M 316  F 320 
K 317  E 321 
L 318  I 322 
M 319  Y 323 
S 320  N 324 
A 321  E 325 
E 322  D 326 
D 323  R 327 
S 324  K 328 
M 325  P 329 
R 326  V 330 
I 327  S 331 
T 328  Q 332 
N 329  E 333 
E 330  N 336 
S 331  I 337 
L 332  L 338 
G 333  A 339 
I 334  R 340 
TER 
END 
