PFRMAT AL 
TARGET T0057 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK SW:G3P_METFE               1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDL 
REMARK SW:G3P_METFO               1 MKSVGINGYGTIGKRVADAVSAQDDMKIVGVTKRSPDFEARMAVEKGYDL 
REMARK PIR:S02804                 1 MKSVGINGYGTIGKRVADAVSAQDDMKIVGVTKRSPDFEARMAVEKGYDL 
REMARK PIR:E69001                 1 MISVAINGYGTIGKRVADAVAAQDDMKVAGVSKTKPDFEARVAIEKGYDL 
REMARK SW:G3P_METBR               1 MKSVGINGYGTIGKRVADAVSAQDDMKIVGVTKRSPDFEARMAVENGYDL 
REMARK PIR:A64443                 4 ..KVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKL 
REMARK PIR:C69466                 3 KVKVAINGYGTIGKRVADAVSLQDDMEVVGVTKTRPDFEAKLGAKR.YPL 
REMARK SW:G3P_PYRWO               2 KIKVGINGYGTIGKRVAYAVTKQDDMELIGVTKTKPDFEAYRAKELGIPV 
REMARK GP:AB009526_49             2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPV 
REMARK SW:G3P_SULSO               1 MINVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGYRI 
REMARK PIR:S63529                 1 MINVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRI 
REMARK SW:G3P_BACST               2 .VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTANADGLAHLLK.YDS 
REMARK    
REMARK SW:G3P_METFE              51 YVAIPE.......RVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGAK 
REMARK SW:G3P_METFO              51 YIS..APE.....RENSFEEAGIKVTGTAEELFEKLDIVVDCTPEGIGAK 
REMARK PIR:S02804                51 YISVPE.......RESSFEEAGIKVTGTADELLEKLDIVVDCTPEGIGAK 
REMARK PIR:E69001                51 YVSIPE.......REKLFGEAGIPVSGTVEDMLEEADIVVDATPEGIGAK 
REMARK SW:G3P_METBR              51 YISVPE.......RESSFEEAGIKVTGTADELLEKLDIVVDCTPEGIGAK 
REMARK PIR:A64443                52 FVAIPDNE.....RVKLFEDAGIPVEGTILDIIEDADIVVDGAPKKIGKQ 
REMARK PIR:C69466                52 YVA..KPE.....NVELFERAGIEIQGTIEDLLPKADIVVDCSPNKVGAE 
REMARK SW:G3P_PYRWO              52 YAA..SEE.....FLPRFEKAGFEVEGTLNDLLEKVDIIVDATPGGMGEK 
REMARK GP:AB009526_49            52 YAA..SEE.....FIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAK 
REMARK SW:G3P_SULSO              51 YAL..PQQ.....SIKKFEESGIPVAGTVDYLIKTSDIVVDTTPNGVGAQ 
REMARK PIR:S63529                51 YVP...QQ.....SIKKFEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQ 
REMARK SW:G3P_BACST              50 VHGRLDAEVVVNDGVSVNGKEIIVKAERNPENLAWGEIGVDIVVESTGRF 
REMARK    
REMARK SW:G3P_METFE              94 NL.....KMYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEESYGKDYTRVV 
REMARK SW:G3P_METFO              94 NKE....GTYEKMGLKATFQGGEKHDQIGLSFNSFSNYKDVIGKDYARVV 
REMARK PIR:S02804                94 NKE....GTYEKMGLKAIFQGGEKHDQIGLSFNSFSNYNDVIGKDYARVV 
REMARK PIR:E69001                94 NL.....EMYREKGIKAIFQGGEKHDAIGLSFNSFANYDESLGADYTRVV 
REMARK SW:G3P_METBR              94 NKE....GTYEKMGLKAIFQGGEKHDQIGLSFNSFSNYNDVIGKDYARVV 
REMARK PIR:A64443                97 NLE....NIYKPHKVKAILQGGEKAKDVEDNFNALWSYNRCYGKDYVRVV 
REMARK PIR:C69466                95 NKA....KYYEKAGIKAIFQGGEKKDVAEVSFNALANYDEAVGKSYVRVV 
REMARK SW:G3P_PYRWO              95 NK.....QLYEKAGVKAIFQGGEKAEVAQVSFVAQANYEAALGKDYVRVV 
REMARK GP:AB009526_49            95 NK.....PLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVV 
REMARK SW:G3P_SULSO              94 YK.....PIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVV 
REMARK PIR:S63529                93 YK.....PIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVV 
REMARK SW:G3P_BACST             100 TKREDAAKHLEAGAKKVIISAPAKVENITVVMGVNQDKYDPKAHHVISNA 
REMARK    
REMARK SW:G3P_METFE             139 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPAQVSKGPINAIIPNPP 
REMARK SW:G3P_METFO             140 SCNTTGLCRTLNPINDLCGIKKVRAVMVRRGADPSQVKKGPINAIVPNPP 
REMARK PIR:S02804               140 SCNTTGLCRTLNPINDLCGIKKVRAVMVRRGADPGQVKKGPINAIVPNPP 
REMARK PIR:E69001               139 SCNTTGLCRTLKPIDDLCGIKKVRAVMVRRGADPVQVKKGPINAIVPNPP 
REMARK SW:G3P_METBR             140 SCNTTGLCRTLNPINDLCGIKKVRAVMVRRGADPGQVKKGPINAIVPNPP 
REMARK PIR:A64443               143 SCNTTGLCRILYAINSIADIKKARIVLVRRAADPNDDKTGPVNAITPNPV 
REMARK PIR:C69466               141 SCNTTGLTRLIYMLKTNFSIGRIRATMLRRVVDPKEDKKGLVNGIMPDPV 
REMARK SW:G3P_PYRWO             140 SCNTTGLVRTLNAIKD.Y.VDYVYAVMIRRAADPNDIKRGPINAIKP.SV 
REMARK GP:AB009526_49           140 SCNTTGLVRTLSAIREYADY..VYAVMIRRAADPNDTKRGPINAIKP.TV 
REMARK SW:G3P_SULSO             139 SCNTTALLRTICTVNKVSKVENVRATIVRRAADQKEVKKGPINSLVPDPA 
REMARK PIR:S63529               138 SCNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKKGPINSLVPDPA 
REMARK SW:G3P_BACST             150 SCTTNCLAPFAKVLHQEFGIVRGMMTTVHSYTNNQRILDLPTHKDLRGAR 
REMARK    
REMARK SW:G3P_METFE             189 KLPSHHGPDVKTVL..........DINIDTMAVIVPTTLMHQHNVMVEVE 
REMARK SW:G3P_METFO             190 TVPSHHGPDVQTVM.........YDLNITTMALLVPTTLMHQHNLMVELE 
REMARK PIR:S02804               190 TVPSHHGPDVQTVM.........YDLNITTMALLVPTTLMHQHNLMVELE 
REMARK PIR:E69001               189 TVPSHHGPDLKTVMK.........GVNIHTVALLVPTTLMHQHNIMVELE 
REMARK SW:G3P_METBR             190 TVPSHHGPDVQTVM.........YDLNITTMALLVPTTLMHQHNLMVELE 
REMARK PIR:A64443               193 TVPSHHGPDVVSVVP.......EFEGKILTSAVIVPTTLMHMHTLMVEVD 
REMARK PIR:C69466               191 AIPSHHGPDVKTVLP.........DVDIVTTAFKLPTTLMHVHSLCVEMR 
REMARK SW:G3P_PYRWO             187 TIPSHHGPDVQTVIP..........INIETSAFVVPTTIMHVHSIMVELK 
REMARK GP:AB009526_49           187 EVPSHHGPDVQTVIP..........INIETMAFVVPTTLMHVHSVMVELK 
REMARK SW:G3P_SULSO             189 TVPSHHAKDVNSVIR.........NLDIATMAVIAPTTLMHMHFINITLK 
REMARK PIR:S63529               188 TVPSHHAKDVNSVIR.........NLDIATMAVIAPTTLMHMHFINITLK 
REMARK SW:G3P_BACST             200 AAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELE 
REMARK    
REMARK SW:G3P_METFE             229 ETPTVDDIIDVFEDTPRVILISAEDGLTSTAEIMEYAKELGRSRNDLFEI 
REMARK SW:G3P_METFO             231 SSVSIDDIKDKLNETPRVLLLKAKEGLGSTAEFMEYAKELGRSRNDLFEI 
REMARK PIR:S02804               231 SSVSVDDIKEKLNETPRVLLLKAGEGLTSTAGFMEYAKDLGRSRNDLFEI 
REMARK PIR:E69001               230 DPVEADEIKARLDETTRVMLVRASEGLASTAEIMEYAKELGRSRNDLFEI 
REMARK SW:G3P_METBR             231 SSVSVDDIKEKLNETPRVLLLKAGEGLTSTAGFMEYAKDLGRSRNDLFEI 
REMARK PIR:A64443               236 GDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIEYGRDLGRLRYDINEL 
REMARK PIR:C69466               232 EAVKAEDVVSALSEEPRIMLISAEDGFTSTAKVIEFAREL.RLRYDLYEN 
REMARK SW:G3P_PYRWO             227 KPLTREDVIDIFENTTRVLLFEKEKGFESTAQLIEFARDLHREWNNLYEI 
REMARK GP:AB009526_49           227 KPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDLHREWNNLYEI 
REMARK SW:G3P_SULSO             230 DKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPEV 
REMARK PIR:S63529               229 DKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPEV 
REMARK SW:G3P_BACST             250 KEVTVEEVNAAL...........K......AA....A.....E.GELKGI 
REMARK    
REMARK SW:G3P_METFE             279 PVWRESITVVDNEIYYMQAVHQESDIVPENVDAVRAILEM...EEDKYKS 
REMARK SW:G3P_METFO             281 GVWEESLNIVDGELYYMQAIHQESDVVPENVDAIRAMLEM...EDNPSKS 
REMARK PIR:S02804               281 GVWEESLNIVDGELYYMQAIHQESDVVPENVDAIRAMLEM...ENDPSKS 
REMARK PIR:E69001               280 PVWEESINVVDGELFYMQAVHQESDAVPESVDAIRALLEL...EEDNMKS 
REMARK SW:G3P_METBR             281 GVWEESLNIVDGELYYMQAIHQESDVVPENVDAIRAMLEM...ENDPSKS 
REMARK PIR:A64443               286 VVWEESINVLENEIFLMQAVHQESIVIPENIDCIRAMLQM...EEDNFKS 
REMARK PIR:C69466               281 IVWRESIGVDGNDLFVTQAVHQEAIVVPENIDAIRAMFEL....AEKEES 
REMARK SW:G3P_PYRWO             277 AVWKESINVKGNRLFYIQAVHQESDVIPENIDAIRAMFEI....AEKWES 
REMARK GP:AB009526_49           277 AVWKESINIKGNRLFYIQAVHQESDVIPENIDAIRAMFEL....ADKWDS 
REMARK SW:G3P_SULSO             280 MIFSDSIYVKDDEVMLMYAVHQESIVVPENIDAIRASMKLMSAEDSMRIT 
REMARK PIR:S63529               279 MIFSDSIYVKDDEVMLMYAVHQESIVVPENIDAIRASMKLMSAEDSMRIT 
REMARK SW:G3P_BACST             273 LAYSEEP.........LVSRNYNGSTVSSTIDALSTMVID....GKMVKV 
REMARK    
REMARK SW:G3P_METFE             326 INKTNKAMNILQ 
REMARK SW:G3P_METFO             328 IEKTNKAMGIL. 
REMARK PIR:S02804               328 IQKTNKAMGIL. 
REMARK PIR:E69001               327 IMKTNRAMGIL. 
REMARK SW:G3P_METBR             328 IQKTNKAMGIL. 
REMARK PIR:A64443               333 IEKTNKAMGI.Q 
REMARK PIR:C69466               327 IRKTNESLGIGK 
REMARK SW:G3P_PYRWO             323 IKKTNKSLGILK 
REMARK GP:AB009526_49           323 IKKTNKSLGILK 
REMARK SW:G3P_SULSO             330 NESLGILKGYLI 
REMARK PIR:S63529               329 NESLGILKGYLI 
REMARK SW:G3P_BACST             310 VSWYDNETGYSH 
REMARK    
REMARK    
REMARK Results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK t0057.pep 
REMARK pdb90:1gd1O               +  74.18  58.38  334. ! Resolution=1.80  334 residues $HOLO-*D-*GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 
REMARK pdb90:1gadO               +  47.16  38.20  330. ! Resolution=1.80  330 residues MOL_ID: 1; 
REMARK pdb90:1cerO               +  44.24  36.01  331. ! Resolution=2.50  331 residues MOL_ID: 1; 
REMARK Alignment: 
REMARK // 
REMARK    
REMARK t0057.pep                  1 MINVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRI 
REMARK 1GD1O                      2 .VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLT.DANTLAHLLK.YDS 
REMARK   Consensus                1 MVKVGIDGYGRIGRRVFRAVLKQPDMEVVGVTKLKPDFEGFMHLMKGYDL 
REMARK    
REMARK t0057.pep                 51 YVP........Q.QSIKKFEESGIPVAGTVEDLIKTSDIVVDTTPNGVGA 
REMARK 1GD1O                     49 VHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGR 
REMARK   Consensus               51 YHGRLDPEVVVD.DGIKVFGKEGIPVAGRVPDLLEWGDIVVDIVPEGIGR 
REMARK    
REMARK t0057.pep                 92 QYK.....PIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALGKKYIRV 
REMARK 1GD1O                     99 FTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISN 
REMARK   Consensus              101 FTKREDAAKHYEKGGKKVIFQGGEKVEDIDVVFGVLQDFYDPFGHHYIRV 
REMARK    
REMARK t0057.pep                137 VSCNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKKGPINSLVPDP 
REMARK 1GD1O                    149 ASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRR.A 
REMARK   Consensus              151 VSCNTTCLCRFLKVLHQDFGIIRVMMVMVRRYTDPQRIMKGPIHKILPGP 
REMARK    
REMARK t0057.pep                187 ATVPSHHAKDVNSVIR.........NLDIATMAVIAPTTLMHMHFINITL 
REMARK 1GD1O                    198 RAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAEL 
REMARK   Consensus              201 RTVPDHHGPDVKGVVKAVALVLPELKVKLDGMAMRVPTPLMHVHDLMVEL 
REMARK    
REMARK t0057.pep                228 KDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPE 
REMARK 1GD1O                    248 EKEVTVEEVNAALK...............AAAE............GELKG 
REMARK   Consensus              251 EKEVTVEDVMDVLEDTPRVLLIRAKDGFDSTAELMEYARDLGREWGDLFE 
REMARK    
REMARK t0057.pep                278 VMIFSDSIYVKDDEVMLMYAVHQESIVVPENIDAIRASMKLMSAEDSMRI 
REMARK 1GD1O                    271 ILAYSEEP.........LVSRDYNGSTVSSTIDALSTMVID....GKMVK 
REMARK   Consensus              301 ILVWKEDINVMDDELFYMQAVHYDGDVVPETIDALRTMLEMMSAEGKMIK 
REMARK    
REMARK t0057.pep                328 TNESLGILKGYL. 
REMARK 1GD1O                    308 VVSWYDNETGYSH 
REMARK   Consensus              351 VIKWYDKEMGYLH 
REMARK    
REMARK   Consensus              401  
REMARK    
MODEL 1  
PARENT 1GD1O 
I   2    V   1 
N   3    K   2 
V   4    V   3 
A   5    G   4 
V   6    I   5 
N   7    N   6 
G   8    G   7 
Y   9    F   8 
G  10    G   9 
T  11    R  10 
I  12    I  11 
G  13    G  12 
K  14    R  13 
R  15    N  14 
V  16    V  15 
A  17    F  16 
D  18    R  17 
A  19    A  18 
I  20    A  19 
I  21    L  20 
K  22    K  21 
Q  23    N  22 
P  24    P  23 
D  25    D  24 
M  26    I  25 
K  27    E  26 
L  28    V  27 
V  29    V  28 
G  30    A  29 
V  31    V  30 
A  32    N  31 
K  33    D  32 
T  34    L  33 
S  35    T  34 
N  37    D  36 
Y  38    A  37 
E  39    N  38 
A  40    T  39 
F  41    L  40 
I  42    A  41 
A  43    H  42 
H  44    L  43 
R  45    L  44 
R  46    K  45 
I  48    Y  46 
R  49    D  47 
I  50    S  48 
Y  51    V  49 
V  52    H  50 
P  53    G  51 
Q  54    N  60 
Q  55    N  62 
S  56    N  63 
I  57    L  64 
K  58    V  65 
K  59    V  66 
F  60    N  67 
E  61    G  68 
E  62    K  69 
S  63    E  70 
G  64    I  71 
I  65    I  72 
P  66    V  73 
V  67    K  74 
A  68    A  75 
G  69    E  76 
T  70    R  77 
V  71    D  78 
E  72    P  79 
D  73    E  80 
L  74    N  81 
I  75    L  82 
K  76    A  83 
T  77    W  84 
S  78    G  85 
D  79    E  86 
I  80    I  87 
V  81    G  88 
V  82    V  89 
D  83    D  90 
T  84    I  91 
T  85    V  92 
P  86    V  93 
N  87    E  94 
G  88    S  95 
V  89    T  96 
G  90    G  97 
A  91    R  98 
Q  92    F  99 
Y  93    T 100 
K  94    K 101 
P  95    K 107 
I  96    H 108 
Y  97    L 109 
L  98    E 110 
Q  99    A 111 
L 100    G 112 
Q 101    A 113 
R 102    K 114 
N 103    K 115 
A 104    V 116 
I 105    I 117 
F 106    I 118 
Q 107    S 119 
G 108    A 120 
G 109    P 121 
E 110    A 122 
K 111    K 122A 
A 112    N 123 
E 113    E 124 
V 114    D 125 
A 115    I 126 
D 116    T 127 
I 117    I 128 
S 118    V 129 
F 119    M 130 
S 120    G 131 
A 121    V 132 
L 122    N 133 
C 123    Q 134 
N 124    D 135 
Y 125    K 136 
N 126    Y 137 
E 127    D 138 
A 128    P 138A 
L 129    K 139 
G 130    A 140 
K 131    H 141 
K 132    H 142 
Y 133    V 143 
I 134    I 144 
R 135    S 145 
V 136    N 146 
V 137    A 147 
S 138    S 148 
C 139    C 149 
N 140    T 150 
T 141    T 151 
T 142    N 152 
A 143    C 153 
L 144    L 154 
L 145    A 155 
R 146    P 156 
T 147    F 157 
I 148    A 158 
C 149    K 159 
T 150    V 160 
V 151    L 161 
N 152    H 162 
K 153    E 163 
V 154    Q 164 
S 155    F 165 
K 156    G 166 
V 157    I 167 
E 158    V 168 
K 159    R 169 
V 160    G 170 
R 161    M 171 
A 162    M 172 
T 163    T 173 
I 164    T 174 
V 165    V 175 
R 166    H 176 
R 167    S 177 
A 168    Y 178 
A 169    T 179 
D 170    N 180 
Q 171    D 181 
K 172    Q 182 
E 173    R 183 
V 174    I 184 
K 175    L 185 
K 176    D 186 
G 177    L 187 
P 178    P 188 
I 179    H 190 
N 180    K 191 
S 181    D 192 
L 182    L 193 
V 183    R 194 
P 184    R 195 
P 186    A 196 
A 187    R 197 
T 188    A 198 
V 189    A 199 
P 190    A 200 
S 191    E 201 
H 192    S 202 
H 193    I 203 
A 194    I 204 
K 195    P 205 
D 196    T 206 
V 197    T 207 
N 198    T 208 
S 199    G 209 
V 200    A 210 
I 201    A 211 
R 202    K 212 
N 203    K 222 
L 204    G 223 
D 205    K 224 
I 206    L 225 
A 207    N 226 
T 208    G 227 
M 209    M 228 
A 210    A 229 
V 211    M 230 
I 212    R 231 
A 213    V 232 
P 214    P 233 
T 215    T 234 
T 216    P 235 
L 217    N 236 
M 218    V 237 
H 219    S 238 
M 220    V 239 
H 221    V 240 
F 222    D 241 
I 223    L 242 
N 224    V 243 
I 225    A 244 
T 226    E 245 
L 227    L 246 
K 228    E 247 
D 229    K 248 
K 230    E 249 
V 231    V 250 
E 232    T 251 
K 233    V 252 
K 234    E 253 
D 235    E 254 
I 236    V 255 
L 237    N 256 
S 238    A 257 
V 239    A 258 
L 240    L 259 
E 241    K 260 
A 257    A 261 
T 258    A 262 
A 259    A 263 
E 260    E 264 
N 273    G 265 
D 274    E 266 
I 275    L 267 
P 276    K 268 
E 277    G 269 
V 278    I 270 
M 279    L 271 
I 280    A 272 
F 281    Y 273 
S 282    S 274 
D 283    E 275 
S 284    E 276 
I 285    P 277 
M 295    L 278 
Y 296    V 279 
A 297    S 280 
V 298    R 281 
H 299    D 282 
Q 300    Y 283 
E 301    N 284 
S 302    G 285 
I 303    S 286 
V 304    T 287 
V 305    V 288 
P 306    S 289 
E 307    S 290 
N 308    T 291 
I 309    I 292 
D 310    D 293 
A 311    A 294 
I 312    L 295 
R 313    S 296 
A 314    T 297 
S 315    M 298 
M 316    V 299 
K 317    I 300 
L 318    D 301 
D 323    G 302 
S 324    K 303 
M 325    M 304 
R 326    V 305 
I 327    K 306 
T 328    V 307 
N 329    V 308 
E 330    S 309 
S 331    W 310 
L 332    Y 311 
G 333    D 312 
I 334    N 313 
L 335    E 314 
K 336    T 315 
G 337    G 316 
Y 338    Y 317 
L 339    S 318 
TER 
END 
