PFRMAT AL 
TARGET T0060 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK t0060.pep        1 PFLELDTNLPANRV.PAGLEKRLCAAAASILGKPADRVNVTVRPGLAMAL 
REMARK SW:MIF_MOUSE     1 PMFIVNTNVPRASV.PEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTF 
REMARK GP:AF045740_1    1 PMFIVNTNVPRSSV.PEGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTF 
REMARK SW:MIF_HUMAN     1 PMFIVNTNVPRASV.PDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAF 
REMARK GP:RNU20999_1    1 PMFIVNTNVPRASV.PEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTF 
REMARK SW:MIF_BOVIN     1 PMFVVNTNVPRASV.PDGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTF 
REMARK PIR:G02438       1 PFLELDTNLPANRV.PAGLEKRLCAAAASILGKPADRVNVTVRPGLAMAL 
REMARK SW:MIF_CHICK     1 PMFTIHTNVCKDAV.PDSLLGELTQQLAKATGKPAQYIAVHIVPDQMMSF 
REMARK SW:DOPD_RAT      1 PFVELETNLPASRI.PAGLENRLCAATATILDKPEDRVSVTIRPGMTLLM 
REMARK GP:AF012431_1    1 PFVELETNLPASRI.PAGLENRLCAATATILDKPEDRVSVTIRPGMTLLM 
REMARK SW:MIFH_BRUMA    1 PYFTIDTNIPQNSI.SSAFLKKASNVVAKALGKPESYVSIHVNGGQAMVF 
REMARK GP:AF040629_1    1 PYFTIDTNKPQDSI.SSAFLKKAPNVVPKALGKPESYVSIHVNGGQPMVF 
REMARK SW:MIFH_CAEEL    1 PMVRVATNLPNEKV.PVDFEIRLTDLLARSMGKPRERIAVEIAAGARLVH 
REMARK GP:ATTS5327_1    1 PCLNLSTNVNLDGVDTSSILSEASSTVAKIIGKPENYVMIVLKGSVPMSF 
REMARK GP:CEF13G3_9     1 PVIKVQTNV..KKV.SDGFEVRLAIHMAKVMKRPESQIFVSLDMNSRMTR 
REMARK    
REMARK t0060.pep       51 SGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRF 
REMARK SW:MIF_MOUSE    51 SGTNDPCALCSLHSIGKIG.GAQNRNYSKLLCGLLSDRLHISPDRVYINY 
REMARK GP:AF045740_1   51 SGSSDPCALCSLHSIGKIG.GAQNRTYSKLLCGLLADRLRISPDRIYINY 
REMARK SW:MIF_HUMAN    51 GGSSEPCALCSLHSIGKIG.GAQNRSYSKLLCGLLAERLRISPDRVYINY 
REMARK GP:RNU20999_1   51 RGTSDPCALCSLHSIGKIG.GAQNRNYSKLLCGLLSDRLHISPDRVYINY 
REMARK SW:MIF_BOVIN    51 GGSSEPCALCSLHSIGKIG.GAQNRSYSKLLCGLLTERLRISPDRIYINF 
REMARK PIR:G02438      51 SGSTEPCAQCSISSIGVVGTARDNRSHSAHFFEFLTKELALGQDRILIRF 
REMARK SW:MIF_CHICK    51 GGSTDPCALCSLYSIGKIG.GQQNKTYTKLLCDMIAKHLHVSADRVYINY 
REMARK SW:DOPD_RAT     51 NKSTEPCAHLLISSIGVVGTAEQNRSHSSSFFKFLTEELSLDQDRIIIRF 
REMARK GP:AF012431_1   51 NKSTEPCAHLLVSSIGVVGTAEQNRTHSASFFKFLTEELSLDQDRIVIRF 
REMARK SW:MIFH_BRUMA   51 GGSEDPCAVCVLKSIGCVG.PKVNNSHAEKLYKLLADELKIPKNRCYIEF 
REMARK GP:AF040629_1   51 GGSEDPCPVCVLKSIGCVG.PKVNNSHAEKLYKLLADELKIPKNRCYIES 
REMARK SW:MIFH_CAEEL   51 GATHDPVTVISIKSIGAVS.AEDNIRNTAAITEFCGKELGLPKDKVVITF 
REMARK GP:ATTS5327_1   51 GGTEDPAAYGELVSIGGLN.ADVNKKLSAAVSAILETKLSVPKSRFFLKF 
REMARK GP:CEF13G3_9    51 GQLTDPLAVLDVTSSTVLT.PILTEEYTVALCEFFSQELALDSDAVLINY 
REMARK    
REMARK t0060.pep      101 FPLESWQIGKIGTVMTFL 
REMARK SW:MIF_MOUSE   101 YDMNAANVGWNGSTFA.. 
REMARK GP:AF045740_1  101 YDMNAANVGWNGSTFA.. 
REMARK SW:MIF_HUMAN   101 YDMNAANVGWNNSTFA.. 
REMARK GP:RNU20999_1  101 YDMNAANVGWNGSTFA.. 
REMARK SW:MIF_BOVIN   101 CDMNAANVGWNGSTFA.. 
REMARK PIR:G02438     101 FPLESWQIGKIGTVMTFL 
REMARK SW:MIF_CHICK   101 FDINAANVGWNGSTFA.. 
REMARK SW:DOPD_RAT    101 FPLEPWQIGKKGTVMTFL 
REMARK GP:AF012431_1  101 FPLEAWQIGKKGTVMTFL 
REMARK SW:MIFH_BRUMA  101 VDIEASSMAFNGSTLG.. 
REMARK GP:AF040629_1  101 VDIEASSMAFNGSTFG.. 
REMARK SW:MIFH_CAEEL  101 HDLPPATVGFNGTTVAEA 
REMARK GP:ATTS5327_1  101 YDTKGSFFGWNGATL... 
REMARK GP:CEF13G3_9   101 RSLSPELIGFNGHILTEN 
REMARK    
REMARK    
REMARK Results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1gifA               +  62.45  25.43  115. ! Resolution=1.90  115 residues MOL_ID: 1; 
REMARK pdb90:1aisB               +   5.44   4.09  193. ! Resolution=2.10  193 residues MOL_ID: 1; 
REMARK pdb90:1otfA               +   5.14   3.98   59. ! Resolution=1.90   59 residues MOL_ID: 1; 
REMARK pdb90:7pcy                +   3.86   3.50   98. !  Resolution=1.80   98 residues PLASTOCYANIN 
REMARK Alignment: 
REMARK    
REMARK t0060.pep                  1 PFLELDTNLPANRV.PAGLEKRLCAAAASILGKPADRVNVTVRPGLAMAL 
REMARK 1GIFA                      2 PMFIVNTNVPRASV.PDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAF 
REMARK   Consensus                1 PFFKIDTDVPRDRVDPDGFLKRLCEQLAKVMGKPEDYIAVHIKPGQPMVF 
REMARK    
REMARK t0060.pep                 50 SGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRF 
REMARK 1GIFA                     51 GGSSEPCALCSLHSIGKIG.GAQNRSYSKLLCGLLAERLRISPDRVYINY 
REMARK   Consensus               51 GGTDDPCALCDLKSIGVIGTPEQDRKYTAMLCDFLADELRLPKDRIFIKY 
REMARK    
REMARK t0060.pep                100 FPLESWQIGKIGTVMTFL 
REMARK 1GIFA                    100 YDMNAANVGWNNSTFA.. 
REMARK   Consensus              101 YDLDPSHIGWNGTTFTFL 
REMARK    
MODEL 1  
PARENT 1GIFA 
P   1    P   2     
F   2    M   3     
L   3    F   4     
E   4    I   5     
L   5    V   6     
D   6    N   7     
T   7    T   8     
N   8    N   9     
L   9    V  10     
P  10    P  11     
A  11    R  12     
N  12    A  13     
R  13    S  14     
V  14    V  15     
P  15    P  16     
A  16    D  17     
G  17    G  18     
L  18    F  19     
E  19    L  20     
K  20    S  21     
R  21    E  22     
L  22    L  23     
C  23    T  24     
A  24    Q  25     
A  25    Q  26     
A  26    L  27     
A  27    A  28     
S  28    Q  29     
I  29    A  30     
L  30    T  31     
G  31    G  32     
K  32    K  33     
P  33    P  34     
A  34    P  35     
D  35    Q  36     
R  36    Y  37     
V  37    I  38     
N  38    A  39     
V  39    V  40     
T  40    H  41     
V  41    V  42     
R  42    V  43     
P  43    P  44     
G  44    D  45     
L  45    Q  46     
A  46    L  47     
M  47    M  48     
A  48    A  49     
L  49    F  50     
S  50    G  51     
G  51    G  52     
S  52    S  53     
T  53    S  54     
E  54    E  55     
P  55    P  56     
C  56    C  57     
A  57    A  58     
Q  58    L  59     
L  59    C  60     
S  60    S  61     
I  61    L  62     
S  62    H  63     
S  63    S  64     
I  64    I  65     
G  65    G  66     
V  66    K  67     
V  67    I  68     
G  68    G  69     
A  70    G  70     
E  71    A  71     
D  72    Q  72     
N  73    N  73     
R  74    R  74     
S  75    S  75     
H  76    Y  76     
S  77    S  77     
A  78    K  78     
H  79    L  79     
F  80    L  80     
F  81    C  81     
E  82    G  82     
F  83    L  83     
L  84    L  84     
T  85    A  85     
K  86    E  86     
E  87    R  87     
L  88    L  88     
A  89    R  89     
L  90    I  90     
G  91    S  91     
Q  92    P  92     
D  93    D  93     
R  94    R  94     
I  95    V  95     
L  96    Y  96     
I  97    I  97     
R  98    N  98     
F  99    Y  99     
F 100    Y 100     
P 101    D 101     
L 102    M 102     
E 103    N 103     
S 104    A 104     
W 105    A 105     
Q 106    N 106     
I 107    V 107     
G 108    G 108     
K 109    W 109     
I 110    N 110     
G 111    N 111     
T 112    S 112     
V 113    T 113     
M 114    F 114     
T 115    A 115     
TER 
END 
