PFRMAT     AL 
TARGET     T0061 
AUTHOR     7545-6133-3082 
REMARK 
METHOD   blastp was used to find homologous sequences of which a multiple 
METHOD   sequences alignment was build and used as seed for HMMer. The 
METHOD   resulting hmm was used to search against a version of pdb which 
METHOD   only contains proteins of less than 90% homology. One significant 
METHOD   hit was found (empirically estimated E-value: 0.0009). Although 
METHOD   the secondary structure predicted for the target does not 
METHOD   overlap well with the secondary structure of the PDB-entry, this 
METHOD   entry was choosen as a parent. 
METHOD 
MODEL 1 
PARENT 1dkz_A 
A       1       S       423 
D       2       Q       424 
A       3       V       425 
Q       4       F       426 
K       5       S       427 
A       6       T       428 
A       7       A       429 
D       8       E       430 
N       9       D       431 
K       10      N       432 
K       11      Q       433 
P       12      S       434 
V       13      A       435 
N       14      R       445 
S       15      K       446 
W       16      R       447 
T       17      A       448 
C       18      A       449 
E       19      D       450 
D       20      N       451 
F       21      K       452 
L       22      S       453 
A       23      L       454 
V       24      G       455 
D       25      Q       456 
E       26      D       460 
S       27      G       461 
F       28      I       462 
Q       29      N       463 
P       30      P       464 
T       31      A       465 
A       32      P       466 
V       33      R       467 
G       34      G       468 
F       35      M       469 
A       36      P       470 
E       37      Q       471 
A       38      I       472 
L       39      E       473 
N       40      V       474 
N       41      T       475 
K       42      F       476 
D       43      D       477 
K       44      I       478 
P       45      D       479 
E       46      A       480 
D       47      D       481 
A       48      G       482 
V       49      I       483 
L       50      L       484 
D       51      H       485 
V       52      V       486 
Q       53      S       487 
G       54      A       488 
I       55      K       489 
A       56      D       490 
T       57      K       491 
V       58      N       492 
T       59      S       493 
P       60      G       494 
A       61      K       495 
I       62      E       496 
V       63      L       507 
Q       64      N       508 
A       65      E       509 
C       66      D       510 
T       67      E       511 
Q       68      I       512 
D       69      Q       513 
K       70      K       514 
Q       71      M       515 
A       72      V       516 
N       73      R       517 
F       74      D       518 
K       75      A       519 
D       76      E       520 
K       77      A       521 
V       78      N       522 
K       79      A       523 
G       80      E       524 
E       81      A       525 
W       82      D       526 
D       83      R       527 
K       84      K       528 
I       85      F       529 
K       86      E       530 
K       87      E       531 
D       88      L       532 
M       89      V       533 
TER 
END 
