PFRMAT AL 
TARGET t0061 
AUTHOR 4139-4764-1095 
METHOD This is only the second proposal for the target t0061. 
METHOD For this model, secondary structure was predicted with  
METHOD PHD and Predator. This was used as input data for the 
METHOD THREADER2 program. The 20 highest scoring results were 
METHOD rethreaded with sequence shuffling to improve the  
METHOD result. The data above was the highest scorer in the 
METHOD second run. 
MODEL 2 
PARENT 2ligA 
A   1	L  33 
D   2	Q  34 
A   3	H  35 
Q   4	C  36 
K   5	Q  37 
A   6	Q  38 
A   7	G  39 
D   8	F  40 
N   9	V  41 
K  10	I  42 
K  11	S  43 
P  12	N  44 
V  13	E  45 
N  14	L  46 
S  15	R  47 
W  16	Q  48 
T  17	Q  49 
C  18	Q  50 
E  19	S  51 
D  20	E  52 
F  21	L  53 
L  22	T  54 
A  23	S  55 
V  24	T  56 
D  25	W  57 
E  26	D  58 
S  27	L  59 
F  28	M  60 
Q  29	L  61 
P  30	Q  62 
T  31	T  63 
A  32	R  64 
V  33	I  65 
G  34	N  66 
F  35	L  67 
A  36	S  68 
E  37	R  69 
A  38	S  70 
L  39	A  71 
N  40	A  72 
N  41	R  73 
K  42	M  74 
D  43	M  75 
K  44	A  85 
P  45	K  86 
E  46	T  87 
D  47	D  88 
A  48	L  89 
V  49	L  90 
L  50	Q  91 
D  51	N  92 
V  52	A  93 
Q  53	K  94 
G  54	T  95 
I  55	T  96 
A  56	L  97 
T  57	A  98 
V  58	Q  99 
T  59	A 100 
P  60	A 101 
A  61	A 102 
I  62	H 103 
V  63	Y 104 
Q  64	A 105 
A  65	N 106 
C  66	F 107 
T  67	K 108 
Q  68	N 109 
D  69	M 110 
K  70	A 115 
Q  71	M 116 
A  72	A 117 
N  73	E 118 
F  74	A 119 
K  75	S 120 
D  76	A 121 
K  77	N 122 
V  78	V 123 
K  79	D 124 
G  80	E 125 
E  81	K 126 
W  82	Y 127 
D  83	Q 128 
K  84	R 129 
I  85	Y 130 
K  86	Q 131 
K  87	A 132 
D  88	A 133 
M  89	L 134 
TER 
END 
