PFRMAT AL 
TARGET T0061 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/17/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0061" has a significant match 
REMARK pdb1ngr       5.614     0.255     6.063  MOLECULE: P75 LOW AFFINITY NEUROTROPHIN RECEPTOR; 
REMARK                                          SCOP: Alpha; DEATH domain 
REMARK pdb1cgo       5.184     0.240    10.242  MOLECULE: CYTOCHROME C' 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1cei       5.029     0.234     3.651  MOLECULE: COLICIN E7 IMMUNITY PROTEIN; 
REMARK                                          SCOP: Alpha; Acyl carrier protein 
REMARK pdb1ith_A     4.643     0.220    17.023  HEMOGLOBIN (CYANOMET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1rro       4.441     0.213    17.273  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1lfb       4.176     0.203    12.596  TRANSCRIPTION FACTOR LFB1 (HOMEODOMAIN) 
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle 
REMARK pdb1flp       4.069     0.200     9.487  HEMOGLOBIN I (MONOMERIC) (FERRIC) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1cse_I     3.986     0.197     3.701  SUBTILISIN CARLSBERG (E.C.3.4.21.62) (COMMERCIAL PRODUCT 
REMARK                                          SCOP: A+B; CI-2 family of serine protease inhibitors 
REMARK pdb1lmb_3     3.947     0.195    11.968  LAMBDA REPRESSOR/OPERATOR COMPLEX 
REMARK                                          SCOP: Alpha; lambda repressor-like DNA-binding domains 
REMARK pdb1aep       3.734     0.188     6.082  APOLIPOPHORIN III 
REMARK                                          SCOP: Alpha; Apolipophorin-III 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0061        ADAQKAADNKKPVNSWTCEDFLAVDESFQPTAV.GFAEALNNKDKPEDAV 
REMARK                       |||:..  #: : .||: |.|.::  ||: :| ::| :|.: 
REMARK pdb1ngr      .........GNLYSSLPLTKREEVEKLLNGDTWRHLAGELGYQPEHIDSF 
REMARK  
REMARK t0061        LDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKDM........ 
REMARK               |#:  : :|.|| |# ||.:  : .|.|.  |.|#||:          
REMARK pdb1ngr      THEA..CPVRALLASWGAQDS..ATLDALLAALRRIQRADIVESLCSE 
REMARK  
PARENT 1ngr 
K 10  G 334 
K 11  N 335 
P 12  L 336 
V 13  Y 337 
N 14  S 338 
S 15  S 339 
W 16  L 340 
T 17  P 341 
C 18  L 342 
E 19  T 343 
D 20  K 344 
F 21  R 345 
L 22  E 346 
A 23  E 347 
V 24  V 348 
D 25  E 349 
E 26  K 350 
S 27  L 351 
F 28  L 352 
Q 29  N 353 
P 30  G 354 
T 31  D 355 
A 32  T 356 
V 33  W 357 
G 34  H 359 
F 35  L 360 
A 36  A 361 
E 37  G 362 
A 38  E 363 
L 39  L 364 
N 40  G 365 
N 41  Y 366 
K 42  Q 367 
D 43  P 368 
K 44  E 369 
P 45  H 370 
E 46  I 371 
D 47  D 372 
A 48  S 373 
V 49  F 374 
L 50  T 375 
D 51  H 376 
V 52  E 377 
Q 53  A 378 
A 56  C 379 
T 57  P 380 
V 58  V 381 
T 59  R 382 
P 60  A 383 
A 61  L 384 
I 62  L 385 
V 63  A 386 
Q 64  S 387 
A 65  W 388 
C 66  G 389 
T 67  A 390 
Q 68  Q 391 
D 69  D 392 
K 70  S 393 
N 73  A 394 
F 74  T 395 
K 75  L 396 
D 76  D 397 
K 77  A 398 
V 78  L 399 
K 79  L 400 
G 80  A 401 
E 81  A 402 
W 82  L 403 
D 83  R 404 
K 84  R 405 
I 85  I 406 
K 86  Q 407 
K 87  R 408 
D 88  A 409 
M 89  D 410 
TER 
END 
