PFRMAT AL 
TARGET T0064 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/17/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0064" has a significant match 
REMARK pdb1r69       8.807     0.442    44.934  434 REPRESSOR (AMINO-TERMINAL DOMAIN) (R1-69) 
REMARK                                          SCOP: Alpha; lambda repressor-like DNA-binding domains 
REMARK pdb1rro       5.554     0.301    22.173  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1lmb_3     4.663     0.262    19.810  LAMBDA REPRESSOR/OPERATOR COMPLEX 
REMARK                                          SCOP: Alpha; lambda repressor-like DNA-binding domains 
REMARK pdb1maz       4.564     0.258     3.807  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb256b_A     4.505     0.255    14.002  CYTOCHROME $B562 (OXIDIZED) 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1cgo       4.291     0.246    11.196  MOLECULE: CYTOCHROME C' 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1hfx       4.061     0.236    14.850  MOLECULE: ALPHA-LACTALBUMIN; 
REMARK                                          SCOP: A+B; Lysozyme-like 
REMARK pdb1lea       4.032     0.235    18.251  LEXA REPRESSOR DNA BINDING DOMAIN 
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle 
REMARK pdb1cpq       3.978     0.233     9.988  MOLECULE: CYTOCHROME C'; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1cnp_A     3.901     0.229    15.361  MOLECULE: CALCYCLIN (RABBIT, APO); 
REMARK pdb1l68       3.867     0.228    13.229  LYSOZYME (E.C.3.2.1.17) (MUTANT WITH SER 44 REPLACED BY ALA, 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0064        MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKV 
REMARK               | | ||:.|:|:|.|  ||:|:.|. .  | .||.| .|||  :|||:| 
REMARK pdb1r69      SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRP..RFLPEL 
REMARK  
REMARK t0064        SAVLDVSVHTLLDEKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLD 
REMARK                :||.:.  |||#|                                    
REMARK pdb1r69      ASALGVSVDWLLNGT................................... 
REMARK  
REMARK t0064        YQKWRKSQKEE 
REMARK                          
REMARK pdb1r69      ........... 
REMARK  
PARENT 1r69 
M A1  S 1 
I A2  I 2 
G A3  S 3 
Q A4  S 4 
R A5  R 5 
I A6  V 6 
K A7  K 7 
Q A8  S 8 
Y A9  K 9 
R A10  R 10 
K A11  I 11 
E A12  Q 12 
K A13  L 13 
G A14  G 14 
Y A15  L 15 
S A16  N 16 
L A17  Q 17 
S A18  A 18 
E A19  E 19 
L A20  L 20 
A A21  A 21 
E A22  Q 22 
K A23  K 23 
A A24  V 24 
G A25  G 25 
V A26  T 26 
A A27  T 27 
K A28  Q 28 
S A29  Q 29 
Y A30  S 30 
L A31  I 31 
S A32  E 32 
S A33  Q 33 
I A34  L 34 
E A35  E 35 
R A36  N 36 
N A37  G 37 
L A38  K 38 
Q A39  T 39 
T A40  K 40 
N A41  R 41 
P A42  P 42 
Q A45  R 43 
F A46  F 44 
L A47  L 45 
E A48  P 46 
K A49  E 47 
V A50  L 48 
S A51  A 49 
A A52  S 50 
V A53  A 51 
L A54  L 52 
D A55  G 53 
V A56  V 54 
S A57  S 55 
V A58  V 56 
H A59  D 57 
T A60  W 58 
L A61  L 59 
L A62  L 60 
D A63  N 61 
E A64  G 62 
K A65  T 63 
TER 
END 
