PFRMAT AL 
TARGET T0065 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25% 
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1oyb 
M    B1 D  125 
K    B2 N  126 
N    B3 L  127 
A    B4 A  128 
K    B5 R  129 
Q    B6 D  130 
E    B7 G  131 
H    B8 L  132 
F    B9 R  133 
E   B10 D  139 
L   B11 N  140 
D   B12 V  141 
Q   B13 F  142 
E   B14 M  143 
W   B15 D  144 
V   B16 A  145 
E   B17 E  146 
L   B18 Q  147 
M   B19 E  148 
V   B20 A  149 
E   B21 K  150 
A   B22 A  151 
K   B23 K  152 
E   B24 K  153 
A   B25 A  154 
N   B26 N  155 
I   B27 L  161 
S   B28 T  162 
P   B29 K  163 
E   B30 D  164 
E   B31 E  165 
I   B32 I  166 
R   B33 K  167 
K   B34 Q  168 
Y   B35 Y  169 
L   B36 I  170 
L   B37 K  171 
L   B38 E  172 
N   B39 Y  173 
K   B40 V  174 
K   B41 Q  175 
S   B42 A  176 
A   B43 A  177 
H   B44 K  178 
P   B45 N  179 
G   B46 S  180 
P   B47 I  181 
A   B48 A  182 
A   B49 A  183 
R   B50 G  184 
S   B51 A  185 
H   B52 D  186 
T   B53 G  187 
V   B54 V  188 
N   B55 E  189 
P   B56 I  190 
F   B57 H  191 
TER 
END 
