PFRMAT AL 
TARGET T0068 
AUTHOR 2746-8822-4809 
METHOD SEQFOLD(MSI) IMPLEMENTATION OF FOLD RECOGNITION 
METHOD BASED ON FISCHER AND EISENBERG PROT. SCI. 5, 943, 1996 
METHOD GLOBAL-LOCAL SEQUENCE ALIGNEMENT DRIVEN BY PREDICTED 
METHOD SECONDARY STRUCTURE  
METHOD CONSEQUENTLY - MODELS ARE ALWAYS BASED ON SINGLE SEQUENCE 
METHOD NOVEL SIGNIFICANCE ANALYSIS BASED ON RANDOM ALIGNMENTS  
MODEL 1 
PARENT 1air 
R 4     A 1     
T 5     T 2     
V 6     D 3     
S 7     T 4     
E 8     G 5     
P 9     G 6     
K 10    Y 7     
T 11    A 8     
P 12    A 9     
S 13    T 10    
S 14    A 11    
C 15    G 12    
T 16    G 13    
T 17    N 14    
L 18    V 15    
K 19    T 16    
A 20    G 17    
D 21    A 18    
S 22    V 19    
S 23    S 20    
T 24    K 21    
A 25    T 22    
T 26    A 23    
S 27    T 24    
T 28    S 25    
I 29    M 26    
Q 30    Q 27    
K 31    D 28    
A 32    I 29    
L 33    V 30    
N 34    N 31    
N 35    I 32    
C 36    I 33    
D 37    D 34    
REMARK REF GAP 3 
A 41    A 35    
V 42    A 36    
R 43    R 37    
L 44    L 38    
S 45    D 39    
A 46    A 40    
G 47    N 41    
S 48    G 42    
T 49    K 43    
S 50    K 44    
V 51    V 45    
REMARK REF GAP 8 
P 60    K 46    
S 61    G 47    
G 62    G 48    
V 63    A 49    
S 64    Y 50    
L 65    P 51    
L 66    L 52    
I 67    V 53    
REMARK REF GAP 5 
L 73    I 54    
R 74    T 55    
A 75    Y 56    
V 76    T 57    
N 77    G 58    
N 78    N 59    
A 79    E 60    
K 80    D 61    
S 81    S 62    
F 82    L 63    
E 83    I 64    
N 84    N 65    
A 85    A 66    
P 86    A 67    
S 87    A 68    
S 88    A 69    
REMARK TAR GAP 2 
C 89    C 72    
G 90    G 73    
V 91    Q 74    
V 92    W 75    
D 93    S 76    
K 94    K 77    
N 95    D 78    
G 96    P 79    
K 97    R 80    
G 98    G 81    
C 99    V 82    
D 100   E 83    
REMARK TAR GAP 2 
A 101   E 86    
F 102   F 87    
I 103   T 88    
T 104   K 89    
A 105   G 90    
V 106   I 91    
S 107   T 92    
REMARK REF GAP 5 
I 113   I 93    
Y 114   I 94    
G 115   G 95    
P 116   A 96    
G 117   N 97    
T 118   G 98    
I 119   S 99    
D 120   S 100   
G 121   A 101   
Q 122   N 102   
G 123   F 103   
G 124   G 104   
V 125   I 105   
REMARK REF GAP 8 
W 134   W 106   
W 135   I 107   
E 136   K 108   
L 137   K 109   
A 138   S 110   
A 139   S 111   
D 140   D 112   
A 141   V 113   
K 142   V 114   
V 143   V 115   
K 144   Q 116   
K 145   N 117   
L 146   M 118   
K 147   R 119   
REMARK TAR GAP 7 
Q 148   A 127   
N 149   K 128   
T 150   D 129   
P 151   G 130   
R 152   D 131   
L 153   M 132   
I 154   I 133   
Q 155   R 134   
I 156   V 135   
N 157   D 136   
K 158   D 137   
S 159   S 138   
K 160   P 139   
N 161   N 140   
F 162   V 141   
REMARK REF GAP 6 
L 169   W 142   
I 170   V 143   
N 171   D 144   
S 172   H 145   
P 173   N 146   
N 174   E 147   
F 175   L 148   
H 176   F 149   
V 177   A 150   
V 178   A 151   
F 179   N 152   
S 180   H 153   
D 181   E 154   
G 182   C 155   
D 183   D 156   
G 184   G 157   
F 185   T 158   
T 186   P 159   
A 187   D 160   
W 188   N 161   
K 189   D 162   
T 190   T 163   
T 191   T 164   
I 192   F 165   
K 193   E 166   
T 194   S 167   
P 195   A 168   
S 196   V 169   
T 197   D 170   
A 198   I 171   
R 199   K 172   
N 200   G 173   
REMARK REF GAP 7 
S 208   A 174   
S 209   S 175   
K 210   N 176   
N 211   T 177   
I 212   V 178   
T 213   T 179   
I 214   V 180   
A 215   S 181   
Y 216   Y 182   
S 217   N 183   
N 218   Y 184   
I 219   I 185   
REMARK REF GAP 1 
T 221   H 186   
G 222   G 187   
D 223   V 188   
D 224   K 189   
N 225   K 190   
V 226   V 191   
A 227   G 192   
I 228   L 193   
K 229   D 194   
A 230   G 195   
Y 231   S 196   
K 232   S 197   
G 233   S 198   
R 234   S 199   
A 235   D 200   
E 236   T 201   
T 237   G 202   
R 238   R 203   
N 239   N 204   
I 240   I 205   
S 241   T 206   
REMARK REF GAP 1 
L 243   Y 207   
H 244   H 208   
N 245   H 209   
D 246   N 210   
F 247   Y 211   
G 248   Y 212   
T 249   N 213   
G 250   D 214   
H 251   V 215   
G 252   N 216   
M 253   A 217   
S 254   R 218   
I 255   L 219   
G 256   P 220   
S 257   L 221   
E 258   Q 222   
T 259   R 223   
M 260   G 224   
G 261   G 225   
V 262   L 226   
Y 263   V 227   
N 264   H 228   
REMARK REF GAP 1 
T 266   A 229   
V 267   Y 230   
D 268   N 231   
D 269   N 232   
L 270   L 233   
K 271   Y 234   
M 272   T 235   
N 273   N 236   
G 274   I 237   
T 275   T 238   
T 276   G 239   
N 277   S 240   
G 278   G 241   
L 279   L 242   
R 280   N 243   
I 281   V 244   
K 282   R 245   
REMARK REF GAP 2 
K 285   Q 246   
S 286   N 247   
A 287   G 248   
A 288   Q 249   
G 289   A 250   
V 290   L 251   
V 291   I 252   
N 292   E 253   
G 293   N 254   
V 294   N 255   
R 295   W 256   
Y 296   F 257   
S 297   E 258   
N 298   K 259   
REMARK REF GAP 10 
V 309   A 260   
I 310   I 261   
D 311   N 262   
T 312   P 263   
V 313   V 264   
Y 314   T 265   
E 315   S 266   
K 316   R 267   
K 317   Y 268   
E 318   D 269   
G 319   G 270   
S 320   K 271   
N 321   N 272   
V 322   F 273   
P 323   G 274   
D 324   T 275   
W 325   W 276   
REMARK REF GAP 16 
V 342   V 277   
L 343   L 278   
N 344   K 279   
G 345   G 280   
E 346   N 281   
N 347   N 282   
A 348   I 283   
K 349   T 284   
K 350   K 285   
P 351   P 286   
I 352   A 287   
E 353   D 288   
V 354   F 289   
T 355   S 290   
M 356   T 291   
K 357   Y 292   
N 358   S 293   
V 359   I 294   
K 360   T 295   
L 361   W 296   
T 362   T 297   
S 363   A 298   
D 364   D 299   
S 365   T 300   
REMARK TAR GAP 7 
T 366   S 308   
W 367   W 309   
Q 368   T 310   
I 369   S 311   
K 370   T 312   
N 371   G 313   
V 372   T 314   
TER 
END 
