PFRMAT AL 
TARGET T0068 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/13/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,329 domain-based structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0068" has a significant match 
REMARK 1tyu_a        5.919     0.117    -1.458  MOLECULE: TAILSPIKE PROTEIN; 
REMARK                                          SCOP: Beta; Single-stranded right-handed beta-helix 
REMARK pdb1gan_A     4.387     0.094     7.719  MOLECULE: GALECTIN-1; 
REMARK                                          SCOP: Beta; ConA-like lectins/glucanases 
REMARK pdb1idj_A     4.205     0.091    -3.686  MOLECULE: PECTIN LYASE A; 
REMARK 1mucAa_A      4.026     0.088   -12.244  MOLECULE: MUCONATE LACTONIZING ENZYME; 
REMARK                                          SCOP: 4-130: A+B; N-terminal domain of enolase & muconate-lactonizing enzyme 
REMARK                                          SCOP: 131-372: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1wod       3.995     0.088     2.566  MOLECULE: MODA; 
REMARK pdb1hlc_A     3.985     0.088    17.735  LECTIN (HUMAN L-14-II) COMPLEXED WITH LACTOSE 
REMARK                                          SCOP: Beta; ConA-like lectins/glucanases 
REMARK pdb1exp       3.974     0.087   -20.010  MOLECULE: BETA-1,4-D-GLYCANASE CEX-CD; 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1ece_A     3.930     0.087   -71.324  MOLECULE: ENDOCELLULASE E1; 
REMARK 1nbcAa_A      3.843     0.085    22.225  MOLECULE: CELLULOSOMAL SCAFFOLDING PROTEIN A; 
REMARK                                          SCOP: Beta; Common fold of diphtheria toxin/transcription factors/cytochrome f 
REMARK pdb1rro       3.500     0.080    17.472  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1cg2_A     3.454     0.079   -32.572  MOLECULE: CARBOXYPEPTIDASE G2; 
REMARK pdb1bme       3.437     0.079   -11.399  MOLECULE: METALLO-BETA-LACTAMASE; 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0068        ...............SDSRTVSEP.KTPSSCTTLKADSS.TATSTIQKAL 
REMARK                             || :|| :  :.|.::. |  .     . :|.  | 
REMARK 1tyu_a       YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVD..F 
REMARK  
REMARK t0068        NNCDQGKAVRLSA...GSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNAK 
REMARK              || :   #| |..   |. ||.|.|   || |..|    ||.|  #::.| 
REMARK 1tyu_a       GGKVL..TIECKAKFIGDGNLIFTK...LGKGSRIA...GVFMESTTTPW 
REMARK  
REMARK t0068        SFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDK 
REMARK               |: | ..    || # #..:|| . ::.||        || # .|   | 
REMARK 1tyu_a       VIKPWTDD....NQWLTDAAAVVATLKQSKT........DGYQPTVSDYV 
REMARK  
REMARK t0068        KVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFS 
REMARK               |. ::  | #|.|  |:|    |.| |..||:|:|.|  |   : |.|. 
REMARK 1tyu_a       KFPGIETLLPPNAK..GQNITSTLEIRECIGVEVHRASGLM...AGFLFR 
REMARK  
REMARK t0068        DGDGFTAW...KTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDN.V 
REMARK                #.|| .   | | #.|. : .|  ..: ..| |||# .|. .|    | 
REMARK 1tyu_a       GCHFCKMVDANNPSGGKDGIITFEN.LSGDWGKGNYVIGGRTSYGSVSSA 
REMARK  
REMARK t0068        AIKAYKGRAETRNISI..LHNDFGTGHGMSI.....GSETMGVYNVTVDD 
REMARK               |# ||   |.:|. |  |   .  .. | |     |  .: .|| .|#| 
REMARK 1tyu_a       QFLRNNG.GFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRD 
REMARK  
REMARK t0068        LK................MNGTTNGLRIKSDKSAAGV.VNGVRYSNVVMK 
REMARK              |:                |.||.   ... .  . |  ||:|  . .|   
REMARK 1tyu_a       SVVIYPVWDGFDLGADTDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGV 
REMARK  
REMARK t0068        NVA....KPIVIDTVYEKKEG..SNVPDWSDITFKDV.......TSETKG 
REMARK               |.    :: |#|::  |##|  .|| .: |.:||||       :. ||. 
REMARK 1tyu_a       GFGMDGKGMYVSNITVEDCAGSGAYL.LTHESVFTNIAIIDTNTKDFQAN 
REMARK  
REMARK t0068        VVVLNGENAKKPIEVTMKNVKLTSDSTWQIKNVNVKK............. 
REMARK               |...:   #|:|:| .|.  ::: .:. |.:|: :               
REMARK 1tyu_a       QIYISGACRVNGLRLIGIRSLTIDAPNSTVSGITGMVDPSRINVANLAEE 
REMARK  
REMARK t0068        ... 
REMARK                  
REMARK 1tyu_a       GLG 
REMARK  
PARENT 1tyu 
S 1  S 128 
D 2  D 129 
S 3  Y 130 
R 4  P 131 
T 5  T 132 
V 6  L 133 
S 7  Q 134 
E 8  D 135 
P 9  A 136 
K 10  S 138 
T 11  A 139 
P 12  A 140 
S 13  V 141 
S 14  D 142 
C 15  G 143 
T 16  L 144 
T 17  L 145 
L 18  I 146 
K 19  D 147 
A 20  R 148 
D 21  D 149 
S 22  Y 150 
S 23  N 151 
T 24  Y 153 
A 25  G 154 
T 26  G 155 
S 27  E 156 
T 28  T 157 
I 29  V 158 
Q 30  D 159 
L 33  F 160 
N 34  G 161 
N 35  G 162 
C 36  K 163 
D 37  V 164 
Q 38  L 165 
A 41  T 166 
V 42  I 167 
R 43  E 168 
L 44  C 169 
S 45  K 170 
A 46  A 171 
G 47  G 175 
S 48  D 176 
T 49  G 177 
S 50  N 178 
V 51  L 179 
F 52  I 180 
L 53  F 181 
S 54  T 182 
G 55  K 183 
L 59  L 184 
P 60  G 185 
S 61  K 186 
G 62  G 187 
V 63  S 188 
S 64  R 189 
L 65  I 190 
L 66  A 191 
G 70  G 192 
V 71  V 193 
T 72  F 194 
L 73  M 195 
R 74  E 196 
A 75  S 197 
V 76  T 198 
N 77  T 199 
N 78  T 200 
A 79  P 201 
K 80  W 202 
S 81  V 203 
F 82  I 204 
E 83  K 205 
N 84  P 206 
A 85  W 207 
P 86  T 208 
S 87  D 209 
S 88  D 210 
D 93  N 211 
K 94  Q 212 
N 95  W 213 
G 96  L 214 
K 97  T 215 
G 98  D 216 
C 99  A 217 
D 100  A 218 
A 101  A 219 
F 102  V 220 
I 103  V 221 
T 104  A 222 
A 105  T 223 
V 106  L 224 
S 107  K 225 
T 108  Q 226 
T 109  S 227 
N 110  K 228 
S 111  T 229 
D 120  D 230 
G 121  G 231 
Q 122  Y 232 
G 123  Q 233 
G 124  P 234 
V 125  T 235 
K 126  V 236 
L 127  S 237 
Q 128  D 238 
D 129  Y 239 
K 130  V 240 
K 131  K 241 
V 132  F 242 
S 133  P 243 
W 134  G 244 
W 135  I 245 
E 136  E 246 
L 137  T 247 
A 138  L 248 
A 139  L 249 
D 140  P 250 
A 141  P 251 
K 142  N 252 
V 143  A 253 
K 144  K 254 
K 147  G 255 
Q 148  Q 256 
N 149  N 257 
T 150  I 258 
P 151  T 259 
R 152  S 260 
L 153  T 261 
I 154  L 262 
Q 155  E 263 
I 156  I 264 
N 157  R 265 
K 158  E 266 
S 159  C 267 
K 160  I 268 
N 161  G 269 
F 162  V 270 
T 163  E 271 
L 164  V 272 
Y 165  H 273 
N 166  R 274 
V 167  A 275 
S 168  S 276 
L 169  G 277 
I 170  L 278 
N 171  M 279 
F 175  A 280 
H 176  G 281 
V 177  F 282 
V 178  L 283 
F 179  F 284 
S 180  R 285 
D 181  G 286 
G 182  C 287 
D 183  H 288 
G 184  F 289 
F 185  C 290 
T 186  K 291 
A 187  M 292 
W 188  V 293 
K 189  N 297 
T 190  P 298 
T 191  S 299 
I 192  G 300 
K 193  G 301 
T 194  K 302 
P 195  D 303 
S 196  G 304 
T 197  I 305 
A 198  I 306 
R 199  T 307 
N 200  F 308 
T 201  E 309 
D 202  N 310 
I 204  L 311 
D 205  S 312 
P 206  G 313 
M 207  D 314 
S 208  W 315 
S 209  G 316 
K 210  K 317 
N 211  G 318 
I 212  N 319 
T 213  Y 320 
I 214  V 321 
A 215  I 322 
Y 216  G 323 
S 217  G 324 
N 218  R 325 
I 219  T 326 
A 220  S 327 
T 221  Y 328 
G 222  G 329 
D 223  S 330 
D 224  V 331 
N 225  S 332 
V 226  A 334 
A 227  Q 335 
I 228  F 336 
K 229  L 337 
A 230  R 338 
Y 231  N 339 
K 232  N 340 
G 233  G 341 
A 235  G 342 
E 236  F 343 
T 237  E 344 
R 238  R 345 
N 239  D 346 
I 240  G 347 
S 241  G 348 
I 242  V 349 
L 243  F 352 
H 244  T 353 
N 245  S 354 
D 246  Y 355 
F 247  R 356 
G 248  A 357 
T 249  G 358 
G 250  E 359 
H 251  S 360 
G 252  G 361 
M 253  V 362 
S 254  K 363 
I 255  T 364 
G 256  G 370 
S 257  S 371 
E 258  T 372 
T 259  T 373 
M 260  S 374 
G 261  R 375 
V 262  N 376 
Y 263  Y 377 
N 264  N 378 
V 265  L 379 
T 266  Q 380 
V 267  F 381 
D 268  R 382 
D 269  D 383 
L 270  S 384 
K 271  V 385 
M 272  R 408 
N 273  P 409 
G 274  G 410 
T 275  D 411 
T 276  Y 412 
N 277  P 413 
G 278  I 414 
L 279  T 415 
R 280  Q 416 
I 281  Y 417 
K 282  P 418 
S 283  L 419 
D 284  H 420 
K 285  Q 421 
S 286  L 422 
A 287  P 423 
A 288  L 424 
G 289  N 425 
V 290  H 426 
V 291  I 428 
N 292  D 429 
G 293  N 430 
V 294  L 431 
R 295  L 432 
Y 296  V 433 
S 297  R 434 
N 298  G 435 
V 299  A 436 
V 300  L 437 
M 301  G 438 
K 302  V 439 
N 303  G 440 
V 304  F 441 
A 305  G 442 
K 306  G 447 
P 307  M 448 
I 308  Y 449 
V 309  V 450 
I 310  S 451 
D 311  N 452 
T 312  I 453 
V 313  T 454 
Y 314  V 455 
E 315  E 456 
K 316  D 457 
K 317  C 458 
E 318  A 459 
G 319  G 460 
S 320  A 463 
N 321  Y 464 
V 322  L 465 
D 324  L 466 
W 325  T 467 
S 326  H 468 
D 327  E 469 
I 328  S 470 
T 329  V 471 
F 330  F 472 
K 331  T 473 
D 332  N 474 
V 333  I 475 
T 334  K 483 
S 335  D 484 
E 336  F 485 
T 337  Q 486 
K 338  A 487 
G 339  N 488 
V 340  Q 489 
V 341  I 490 
V 342  Y 491 
L 343  I 492 
N 344  S 493 
G 345  G 494 
E 346  A 495 
N 347  C 496 
A 348  R 497 
K 349  V 498 
K 350  N 499 
P 351  G 500 
I 352  L 501 
E 353  R 502 
V 354  L 503 
T 355  I 504 
M 356  G 505 
K 357  I 506 
N 358  R 507 
V 359  S 513 
K 360  L 514 
L 361  T 515 
T 362  I 516 
S 363  D 517 
D 364  A 518 
S 365  P 519 
T 366  N 520 
W 367  S 521 
Q 368  T 522 
I 369  V 523 
K 370  S 524 
N 371  G 525 
V 372  I 526 
N 373  T 527 
V 374  G 528 
K 375  M 529 
K 376  V 530 
TER 
END 
