PFRMAT AL  
TARGET T0068 
AUTHOR 9808-8259-1323 
METHOD Searched pdb sequences with max. 90% identity using a profile made 
METHOD from a multiple sequence aligment and PAM250.  
REMARK Aligment for profile: 
REMARK  t0068.pep  SDSRTVSEPK TPSSCTTLKA DSSTATSTIQ KALNNCDQGK AVRLSAGST.  
REMARK pgl2_erwca  SDSRTVSEPK TPSSCTTLKA DSSTATSTIQ KALNNCDQGK AVRLSAGST.  
REMARK pglr_actch  ITTIGDNDFG SSMSHENGIF GLRKVDYGMD RVLDASKTVN VDDFGAKGDG  
REMARK mpa2_cryja  LRSNRSLRKV EHSRHDAINI FNVEKYGAVG DGKHDCTEAF STAWQAACK.  
REMARK pglr_lyces  YDNILEQEFA HDFQAYLSYL SKNIESNNNI DKVDKNGIKV INVLSFGAKG  
REMARK pglr_maldo  IRPRTQLFSS RKLNTITGGI ATSSAPAKTI SVDDFGAKGN GADDTQAFVK  
REMARK  
REMARK             51                                                 100 
REMARK  t0068.pep  .......SVF LSGPLSLPSG VSLLIDKGVT LRAVNNAKSF ENAPSSCGVV  
REMARK pgl2_erwca  .......SVF LSGPLSLPSG VSLLIDKGVT LRAVNNAKSF ENAPSSCGVV  
REMARK pglr_actch  RD....DTKA FEKAWKAACS STSSAVLLVP KKNYLVRPIS FSGPCKSGLT  
REMARK mpa2_cryja  .........K PSAMLLVPGN KKFVVNNLFF NGPCQPHFTF KVDGIIAAYQ  
REMARK pglr_lyces  DGKTYDNIAF EQAWNEACSS RTPVQFVVPK NKNYLLKQIT FSGPCRSSIS  
REMARK pglr_maldo  ......AWKA ACSSSGAMVL VVPQKNYLVR PIEFSGPCKS QLTLQIYGTI  
REMARK  
REMARK             101                                                150 
REMARK  t0068.pep  DK.....NGK GCDAFITAVS TTNSGIYGPG TIDGQGGVKL QDKKVSWWEL  
REMARK pgl2_erwca  DK.....NGK GCDAFITAVS TTNSGIYGPG TIDGQGGVKL QDKKVSWWEL  
REMARK pglr_actch  MQIYGTIEAS DDRSDYRKDG RHWLVFDSVQ NLRVEGGGTI NGNGKIWWQN  
REMARK mpa2_cryja  NP....ASWK NNRIWLQFAK LTGFTLMGKG VIDGQGKQWW .AGQCKW...  
REMARK pglr_lyces  VKIFG.SLEA SSKISDYKDR RLWIAFDSVQ NLVVGGGGTI NGNGQVWWPS  
REMARK pglr_maldo  EASEDRSIYK DIDHWLIFDN VQNLLVVGPG TINGNGNI.. ......WWKN  
REMARK  
REMARK             151                                                200 
REMARK  t0068.pep  AADAKVKKL. KQNTPRLIQI NKSKNFTLYN VSLINSPNFH VVFSDGDGFT  
REMARK pgl2_erwca  AADAKVKKL. KQNTPRLIQI NKSKNFTLYN VSLINSPNFH VVFSDGDGFT  
REMARK pglr_actch  SCKTNKALP. CKDAPTALTF YKSKHVIVKN LKIENAQQIH VSFDNCVNVQ  
REMARK mpa2_cryja  .VNGREICN. DRDRPTAIKF DFSTGLIIQG LKLMNSPEFH LVFGNCEGVK  
REMARK pglr_lyces  SCKINKSLP. CRDAPTALTF WNCKNLKVNN LKSKNAQQIH IKFESCTNVV  
REMARK pglr_maldo  SCKIKPQPPC GTYAPTAVTF NRCNNLVVKN LNIQDAQQIH VIFQNCINVQ  
REMARK  
REMARK             201                                                250 
REMARK  t0068.pep  AWKTTIKTPS TARNTDGIDP MSSKNITIAY SNIATGDDNV AIKAYKGRAE  
REMARK pgl2_erwca  AWKTTIKTPS TARNTDGIDP MSSKNITIAY SNIATGDDNV AIKAYKGRAE  
REMARK pglr_actch  ASNLMVTAPE NSPNTDGIHV TGTQNIHISS CVIGTGDDCI SIVNGSRK..  
REMARK mpa2_cryja  IIGISITAPR DSPNTDGIDI FASKNFHLQK NTIGTGDDCV AIGTGSSN..  
REMARK pglr_lyces  ASNLMINASA KSPNTDGVHV SNTQYIQISD TIIGTGDDCI SIVSGSQN..  
REMARK pglr_maldo  ASCLTVTAPE DSPNTDGIHV TNTQNITISS SVIGTGDDCI SIVSGSQR..  
REMARK  
REMARK             251                                                300 
REMARK  t0068.pep  TRNISILHND FGTGHGMSIG SET.....MG VYNVTVDDLK MNG.....TT  
REMARK pgl2_erwca  TRNISILHND FGTGHGMSIG SET.....MG VYNVTVDDLK MNG.....TT  
REMARK pglr_actch  ...VRVNDIT CGPGHGISIG SLG.....YG NSEAHVSDVV VNGAKLCGTT  
REMARK mpa2_cryja  ...IVIEDLI CGPGHGISIG SLGRENSRAE VSYVHVNGAK FID.....TQ  
REMARK pglr_lyces  ...VQATNIT CGPGHGISIG SLGSGNSEAY VSNVTVNEAK IIG.....AE  
REMARK pglr_maldo  ...VQATDIT CGPGHGISIG SLGEDGSEDH VSGVFVNGAK LSG.....TS  
REMARK  
REMARK             301                                                350 
REMARK  t0068.pep  NGLRIKSDKS AAGVVNGVRY SNVVMKNVAK PIVIDTVY.E KKEGSNVPDW  
REMARK pgl2_erwca  NGLRIKSDKS AAGVVNGVRY SNVVMKNVAK PIVIDTVY.E KKEGSNVPDW  
REMARK pglr_actch  NGVRIKTWQG GSGSASNIKF QNVEMHNVEN PIIIDQNYCD .QDKPCQEQS  
REMARK mpa2_cryja  NGLRIKTWQG GSGMASHIIY ENVEMINSEN PILINQFYCT .SASACQNQR  
REMARK pglr_lyces  NGVRIKTWQG GSGQASNIKF LNVEMQDVKY PIIIDQNYCD .RVEPCIQQF  
REMARK pglr_maldo  NGLRIKTWKG GSGSATNIVF QNVQMNDVTN PIIIDQNYCD HKTKDCKQQK  
REMARK  
REMARK             351                                                400 
REMARK  t0068.pep  SDITFKD... ....VTSETK GVVVLNGENA KKPIEVTMKN VKLTSDSTWQ  
REMARK pgl2_erwca  SDITFKD... ....VTSETK GVVVLNGENA KKPIEVTMKN VKLTSDSTWQ  
REMARK pglr_actch  SAVQVKNVVY QNIKGTCASN VAITFDCSKR FPCQGIVLED VDLEIEGGAA  
REMARK mpa2_cryja  SAVQIQDVTY KNIRGTSATA AAIQLKCSDS MPCKDIKLSD ISLKXXXXXX  
REMARK pglr_lyces  SAVQVKNVVY ENIKGTSATK VAIKFDCSTN FPCEGIIMEN INLVGESXXX  
REMARK pglr_maldo  SAVQVKNVLY QNIRGTSASG DAITLNCSQS VPCQGIVLQS VQLQNGRAXX  
REMARK  
REMARK             401   
REMARK  t0068.pep  IKNVNVKK 
REMARK pgl2_erwca  IKNVNVKK 
REMARK pglr_actch  AKALXXXX 
REMARK mpa2_cryja  XXXXXXXX 
REMARK pglr_lyces  XXXXXXXX 
REMARK pglr_maldo  XXXXXXXX 
REMARK  
REMARK Profile search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK SWBLA:PGL2_ERWCA          + 147.08  79.03  402. ! P26509 erwinia carotovora. endo-polygalacturonase precursor (ec 3.2.1.15). 8/92 
REMARK SWBLA:PGL1_ERWCA          + 143.61  77.24  402. ! P18192 erwinia carotovora. endo-polygalacturonase precursor (ec 3.2.1.15). 11/97 
REMARK ... 
REMARK pdb90:1rmg                +  20.19  13.75  422. !  Resolution=2.00  422 residues MOL_ID: 1; 
REMARK SWBLA:RHGA_ASPAC          +  20.02  13.75  440. ! Q00001 aspergillus aculeatus. rhamnogalacturonase a precursor (ec 3.2.1.-) (rgas 
REMARK  
REMARK Alignment: 
REMARK t0068.pep       1 SDSRTVSEPKTPSSCTTLKADSSTATSTIQKALNNCDQGKAVRLSAGST. 
REMARK 1rmg.seq        1 ...................................QLSGSVGPLTSASTK 
REMARK   Consensus     1 IDPRTVMEPKTPMSCTTLKIDTSTATSTIQKVLDNCDQGKAVRLGAGSTG 
REMARK    
REMARK t0068.pep      50 .......SVFLSGPLSLPSGVSLLIDKGVTLRAVNNAKSFENAPSSCGVV 
REMARK 1rmg.seq       16 GATKTCN....ILSYGAVADNSTDVGPAITSAWAACKSGGLVYIPSGNYA 
REMARK   Consensus    51 RDKTYDDSVFLSGPLSLPCGVTLLIDFLVKMRPYHAPKTFKNGPCKCGIV 
REMARK    
REMARK t0068.pep      93 DK.....NGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQ.DKKVSWWE 
REMARK 1rmg.seq       62 LNTWVTLTGGSATAIQLDGIIYRTGTASGNMIAVTDTTDFELFSSTSKGA 
REMARK   Consensus   101 DKIYGRTDGKGCDAWLTFVSTTWLGIYGPGTIDGQGGVRLQ.DKKVTWWE 
REMARK    
REMARK t0068.pep     137 LAADAKVKKL.KQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGF 
REMARK 1rmg.seq      112 VQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDG 
REMARK   Consensus   151 LACKAKIKKPCKRDTPRLIQFHKCKHFILFDLKLMDAPQFHVVFDDCDGF 
REMARK    
REMARK t0068.pep     186 TAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRA 
REMARK 1rmg.seq      162 EVYNMAIRGGNEG.GLDGIDVWGS.NIWVHDVEVTNKDECVTVKSPANN. 
REMARK   Consensus   201 QAWKLTIKTPEDAPDTDGIHVMGTKNIHIAYCVIGTGDDCVAIKTYKGRA 
REMARK    
REMARK t0068.pep     236 ETRNISILHNDFGTGHGMSIGSET.....MGVYNVTVDDLKMNG.....T 
REMARK 1rmg.seq      209 ....ILVESIYCNWSGGCAMGSLG........ADTDVTDIVYRNV.YTWS 
REMARK   Consensus   251 ETRDIRILHIDCGPGHGMSIGSLGRDGSQMGVYDVHVDDLKMNGAKLCGT 
REMARK    
REMARK t0068.pep     276 TNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY.E.KKEGSNVP 
REMARK 1rmg.seq      246 SNQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGV 
REMARK   Consensus   301 TDGLRIKTWKGGAGVVNGIRYQDVQMKDVEKPIIIDQIYCD.KKDGPCVP 
REMARK    
REMARK t0068.pep     324 DWSDITFKDV.......TSETKGVVVLNGENAKKPIEVTMKNVKLTSDST 
REMARK 1rmg.seq      296 QLNNITVKN..WKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI..... 
REMARK   Consensus   351 QWSDVQFKDVVYQDIRGTCETKGVIVLDCDDSFPCQDIVMKDVKLTSDGT 
REMARK    
REMARK t0068.pep     367 WQIKNVNVKK 
REMARK 1rmg.seq      339 .......... 
REMARK   Consensus   401 WQIKDVDVKK 
REMARK    
MODEL 1  
PARENT 1rmg 
C  36    Q   1     
D  37    L   2     
Q  38    S   3     
G  39    G   4     
K  40    S   5     
A  41    V   6     
V  42    G   7     
R  43    P   8     
L  44    L   9     
S  45    T  10     
A  46    S  11     
G  47    A  12     
S  48    S  13     
T  49    T  14     
S  54    I  23     
G  55    L  24     
P  56    S  25     
L  57    Y  26     
S  58    G  27     
L  59    A  28     
P  60    V  29     
S  61    A  30     
G  62    D  31     
V  63    N  32     
S  64    S  33     
L  65    T  34     
L  66    D  35     
I  67    V  36     
D  68    G  37     
K  69    P  38     
G  70    A  39     
V  71    I  40     
T  72    T  41     
L  73    S  42     
R  74    A  43     
A  75    W  44     
V  76    A  45     
N  77    A  46     
N  78    C  47     
A  79    K  48     
K  80    S  49     
S  81    G  50     
F  82    G  51     
E  83    L  52     
N  84    V  53     
A  85    Y  54     
P  86    I  55     
S  87    P  56     
S  88    S  57     
C  89    G  58     
G  90    N  59     
V  91    Y  60     
V  92    A  61     
D  93    L  62     
K  94    N  63     
N  95    T  69     
G  96    G  70     
K  97    G  71     
G  98    S  72     
C  99    A  73     
D 100    T  74     
A 101    A  75     
F 102    I  76     
I 103    Q  77     
T 104    L  78     
A 105    D  79     
V 106    G  80     
S 107    I  81     
T 108    I  82     
T 109    Y  83     
N 110    R  84     
S 111    T  85     
G 112    G  86     
I 113    T  87     
Y 114    A  88     
G 115    S  89     
P 116    G  90     
G 117    N  91     
T 118    M  92     
I 119    I  93     
D 120    A  94     
G 121    V  95     
Q 122    T  96     
G 123    D  97     
G 124    T  98     
V 125    T  99     
K 126    D 100     
L 127    F 101     
Q 128    E 102     
D 129    F 104     
K 130    S 105     
K 131    S 106     
V 132    T 107     
S 133    S 108     
W 134    K 109     
W 135    G 110     
E 136    A 111     
L 137    V 112     
A 138    Q 113     
A 139    G 114     
D 140    F 115     
A 141    G 116     
K 142    Y 117     
V 143    V 118     
K 144    Y 119     
K 145    H 120     
L 146    A 121     
K 147    G 123     
Q 148    T 124     
N 149    Y 125     
T 150    G 126     
P 151    A 127     
R 152    R 128     
L 153    I 129     
I 154    L 130     
Q 155    R 131     
I 156    L 132     
N 157    T 133     
K 158    D 134     
S 159    V 135     
K 160    T 136     
N 161    H 137     
F 162    F 138     
T 163    S 139     
L 164    V 140     
Y 165    H 141     
N 166    D 142     
V 167    I 143     
S 168    I 144     
L 169    L 145     
I 170    V 146     
N 171    D 147     
S 172    A 148     
P 173    P 149     
N 174    A 150     
F 175    F 151     
H 176    H 152     
V 177    F 153     
V 178    T 154     
F 179    M 155     
S 180    D 156     
D 181    T 157     
G 182    C 158     
D 183    S 159     
G 184    D 160     
F 185    G 161     
T 186    E 162     
A 187    V 163     
W 188    Y 164     
K 189    N 165     
T 190    M 166     
T 191    A 167     
I 192    I 168     
K 193    R 169     
T 194    G 170     
P 195    G 171     
S 196    N 172     
T 197    E 173     
A 198    G 174     
N 200    G 175     
T 201    L 176     
D 202    D 177     
G 203    G 178     
I 204    I 179     
D 205    D 180     
P 206    V 181     
M 207    W 182     
S 208    G 183     
S 209    S 184     
N 211    N 185     
I 212    I 186     
T 213    W 187     
I 214    V 188     
A 215    H 189     
Y 216    D 190     
S 217    V 191     
N 218    E 192     
I 219    V 193     
A 220    T 194     
T 221    N 195     
G 222    K 196     
D 223    D 197     
D 224    E 198     
N 225    C 199     
V 226    V 200     
A 227    T 201     
I 228    V 202     
K 229    K 203     
A 230    S 204     
Y 231    P 205     
K 232    A 206     
G 233    N 207     
R 234    N 208     
I 240    I 209     
S 241    L 210     
I 242    V 211     
L 243    E 212     
H 244    S 213     
N 245    I 214     
D 246    Y 215     
F 247    C 216     
G 248    N 217     
T 249    W 218     
G 250    S 219     
H 251    G 220     
G 252    G 221     
M 253    C 222     
S 254    A 223     
I 255    M 224     
G 256    G 225     
S 257    S 226     
E 258    L 227     
T 259    G 228     
Y 263    A 229     
N 264    D 230     
V 265    T 231     
T 266    D 232     
V 267    V 233     
D 268    T 234     
D 269    D 235     
L 270    I 236     
K 271    V 237     
M 272    Y 238     
N 273    R 239     
G 274    N 240     
T 275    S 245     
T 276    S 246     
N 277    N 247     
G 278    Q 248     
L 279    M 249     
R 280    Y 250     
I 281    M 251     
K 282    I 252     
S 283    K 253     
D 284    S 254     
K 285    N 255     
S 286    G 256     
A 287    G 257     
A 288    S 258     
G 289    G 259     
V 290    T 260     
V 291    V 261     
N 292    S 262     
G 293    N 263     
V 294    V 264     
R 295    L 265     
Y 296    L 266     
S 297    E 267     
N 298    N 268     
V 299    F 269     
V 300    I 270     
M 301    G 271     
K 302    H 272     
N 303    G 273     
V 304    N 274     
A 305    A 275     
K 306    Y 276     
P 307    S 277     
I 308    L 278     
V 309    D 279     
I 310    I 280     
D 311    D 281     
T 312    G 282     
V 313    Y 283     
Y 314    W 284     
E 315    S 286     
K 316    T 288     
K 317    A 289     
E 318    V 290     
G 319    A 291     
S 320    G 292     
N 321    D 293     
V 322    G 294     
P 323    V 295     
D 324    Q 296     
W 325    L 297     
S 326    N 298     
D 327    N 299     
I 328    I 300     
T 329    T 301     
F 330    V 302     
K 331    K 303     
D 332    N 304     
T 334    N 311     
S 335    G 312     
E 336    A 313     
T 337    T 314     
K 338    R 315     
G 339    P 316     
V 340    P 317     
V 341    I 318     
V 342    R 319     
L 343    V 320     
N 344    V 321     
G 345    C 322     
E 346    S 323     
N 347    D 324     
A 348    T 325     
K 349    A 326     
K 350    P 327     
P 351    C 328     
I 352    T 329     
E 353    D 330     
V 354    L 331     
T 355    T 332     
M 356    L 333     
K 357    E 334     
N 358    D 335     
V 359    I 336     
K 360    A 337     
L 361    I 338     
TER 
END 
