PFRMAT AL 
TARGET T0073 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 7/22/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,329 domain-based structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0073" has a significant match 
REMARK 2tct_a        6.211     0.420    18.132  MOLECULE: TETRACYCLINE REPRESSOR; 
REMARK                                          SCOP: Alpha; Tetracyclin repressor (Tet-repressor, TetR) 
REMARK 1dkxAb_A      5.714     0.392    23.794  MOLECULE: SUBSTRATE BINDING DOMAIN OF DNAK; 
REMARK 1bcrAb_A      4.870     0.343    10.092  MOLECULE: SERINE CARBOXYPEPTIDASE II; 
REMARK 1hloAa_A      4.676     0.332    20.084  MOLECULE: TRANSCRIPTION FACTOR MAX; 
REMARK 1bfrAb_A      4.653     0.331    17.620  MOLECULE: BACTERIOFERRITIN; 
REMARK 2fha_b        4.375     0.315     9.744  MOLECULE: FERRITIN; 
REMARK 1ns1Aa_A      4.297     0.311    16.931  MOLECULE: NONSTRUCTURAL PROTEIN 1; 
REMARK 1pbwAc_A      4.285     0.310    11.912  MOLECULE: PHOSPHATIDYLINOSITOL 3-KINASE; 
REMARK 1efuBa_B      4.062     0.297    13.390  MOLECULE: ELONGATION FACTOR TU; 
REMARK pdb1edi       3.971     0.292    17.716  MOLECULE: STAPHYLOCOCCAL PROTEIN A; 
REMARK pdb1idy       3.945     0.291     8.877  MOLECULE: MOUSE C-MYB DNA-BINDING DOMAIN REPEAT 3; 
REMARK 1serAa_A      3.859     0.286    11.165  SERYL-TRNA SYNTHETASE (E.C.6.1.1.11) COMPLEXED WITH 
REMARK pdb3flx       3.768     0.281    19.462  FELIX (DE NOVO DESIGNED PROTEIN) (MODEL 2) (THEORETICAL 
REMARK 1yrnBa_B      3.693     0.276     5.456  MOLECULE: MATING-TYPE PROTEIN A-1; 
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle 
REMARK pdb1mlp_A     3.472     0.264    14.829  MUREIN LIPOPROTEIN (THEORETICAL MODEL) 
REMARK pdb1atf       3.436     0.262     9.046  ANTIFREEZE POLYPEPTIDE (APF) (THEORETICAL MODEL) 
REMARK pdb1lea       3.429     0.261     6.287  LEXA REPRESSOR DNA BINDING DOMAIN 
REMARK pdb1szt       3.372     0.258    14.817  MOLECULE: HIV-1 ENVELOPE GLYCOPROTEIN GP41; 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0073        .......SLAALKSELQALKKEGFSPEELAA.LESELQALEKKLAALKSK 
REMARK                      ::||..#::#  :|.|::|||:: |..:#::|||:|:. : # 
REMARK 2tct_a       ARLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRAL 
REMARK  
REMARK t0073        LQALKG 
REMARK              ||.|   
REMARK 2tct_a       LDAL.. 
REMARK  
PARENT 2tct 
S 1  V 9 
L 2  I 10 
A 3  D 11 
A 4  A 12 
L 5  A 13 
K 6  L 14 
S 7  E 15 
E 8  L 16 
L 9  L 17 
Q 10  N 18 
A 11  E 19 
L 12  T 20 
K 13  G 21 
K 14  I 22 
E 15  D 23 
G 16  G 24 
F 17  L 25 
S 18  T 26 
P 19  T 27 
E 20  R 28 
E 21  K 29 
L 22  L 30 
A 23  A 31 
A 24  Q 32 
L 25  L 34 
E 26  G 35 
S 27  I 36 
E 28  E 37 
L 29  Q 38 
Q 30  P 39 
A 31  T 40 
L 32  L 41 
E 33  Y 42 
K 34  W 43 
K 35  H 44 
L 36  V 45 
A 37  K 46 
A 38  N 47 
L 39  K 48 
K 40  R 49 
S 41  A 50 
K 42  L 51 
L 43  L 52 
Q 44  D 53 
A 45  A 54 
L 46  L 55 
TER 
END 
