PFRMAT     AL 
TARGET     T0074 
AUTHOR     7545-6133-3082 
REMARK      
METHOD   blastp was used to find homologous sequences of which a multiple   
METHOD   sequences alignment was build and used as seed for HMMer. The 
METHOD   resulting hmm was used to search against a version of pdb which 
METHOD   only contains proteins of less than 90% homology. The resulting 
METHOD   alignments were overlayed with the dssp-information for the  
METHOD   possible parent and the PHD prediction for the target. A specifically 
METHOD   developed neural network was used to score all alignments. The ten 
METHOD   highest-scoring pdb entries were checked and a majority decision was 
METHOD   made (5 out of 10 showed the same fold). The pdb entrie which belonged 
METHOD   to the highest-scoring alignment of those showing the common fold 
METHOD   was then used as a parent.  
METHOD    
MODEL 2 
PARENT 1rro 
V       124     K       37 
K       125     M       38 
P       126     S       39 
E       127     A       40 
D       128     S       41 
K       129     Q       42 
A       130     V       43 
K       131     K       44 
Y       132     D       45 
D       133     I       46 
A       134     F       47 
I       135     R       48 
F       136     F       49 
D       137     I       50 
S       138     D       51 
L       139     N       52 
S       140     D       53 
P       141     Q       54 
N       143     S       55 
G       144     G       56 
F       145     Y       57 
L       146     L       58 
S       147     D       59 
G       148     G       60 
D       149     D       61 
K       150     E       62 
V       151     L       63 
K       152     K       64 
P       153     Y       65 
V       154     F       66 
L       155     L       67 
L       156     Q       68 
N       157     Q       71 
S       158     S       72 
K       159     E       76 
L       160     L       77 
P       161     T       78 
V       162     E       79 
D       163     S       80 
I       164     E       81 
L       165     T       82 
G       166     K       83 
R       167     S       84 
V       168     L       85 
W       169     M       86 
E       170     D       87 
L       171     A       88 
S       172     A       89 
D       173     D       90 
I       174     N       91 
D       175     D       92 
H       176     G       93 
D       177     D       94 
G       178     G       95 
M       179     K       96 
L       180     I       97 
D       181     G       98 
R       182     A       99 
D       183     D       100 
E       184     E       101 
F       185     F       102 
A       186     Q       103 
V       187     E       104 
A       188     M       105 
M       189     V       106 
F       190     H       107 
TER 
END 
