PFRMAT AL 
TARGET T0074 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/13/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0074" has a significant match 
REMARK pdb1rro       5.119     0.196     5.606  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb5pal       4.802     0.187    12.342  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1ptf       4.772     0.186     4.042  HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN (HPR) 
REMARK                                          SCOP: A+B; Histidine-containing phosphocarrier proteins (HPr) 
REMARK pdb1kte       4.704     0.184     6.437  MOLECULE: THIOLTRANSFERASE; 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1cei       4.692     0.184     4.090  MOLECULE: COLICIN E7 IMMUNITY PROTEIN; 
REMARK                                          SCOP: Alpha; Acyl carrier protein 
REMARK pdb1plc       4.548     0.179     6.617  PLASTOCYANIN (CU2+, PH 6.0) 
REMARK                                          SCOP: Beta; Cupredoxins 
REMARK pdb1ncx       4.482     0.177    16.422  MOLECULE: TROPONIN C; 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1l68       4.473     0.177     5.825  LYSOZYME (E.C.3.2.1.17) (MUTANT WITH SER 44 REPLACED BY ALA, 
REMARK                                          SCOP: A+B; Lysozyme-like 
REMARK pdb1gks       3.904     0.160     7.940  MOLECULE: CYTOCHROME C551; 
REMARK pdb1who       3.747     0.156    -3.560  MOLECULE: ALLERGEN PHL P 2; 
REMARK                                          SCOP: Beta; C2 domain-like 
REMARK pdb1sri_A     3.651     0.153     9.515  STREPTAVIDIN COMPLEXED WITH 3',5'-DIMETHYL-HABA 
REMARK                                          SCOP: Beta; Streptavidin-like 
MODEL  2 
REMARK Sequence alignment follows: 
REMARK t0074        .................................PWAVKPEDKAKYDAIFD 
REMARK                                               .:. :|:|.|: |||#. 
REMARK pdb5pal      PMTKVLKADDINKAISAFKDPGTFDYKRFFHLVGLKGKTDAQVK.EVFEI 
REMARK  
REMARK t0074        SLSPVNGFLSGDKVKPVL..LNSK...LPVDILGRVWELSDIDHDGMLDR 
REMARK               . :#.| |. : :| ||  | ::   ||#:#| .|.|.. #|::| |   
REMARK pdb5pal      LDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGA 
REMARK  
REMARK t0074        DEFAVAMFLVYCALEKEPVPMSLPPALVPPSKRKTW 
REMARK              |#||#|| #                            
REMARK pdb5pal      DEFAKMVAQA.......................... 
REMARK  
PARENT 5pal 
P 121  G 34 
W 122  L 35 
A 123  K 36 
V 124  G 37 
K 125  K 38 
P 126  T 39 
E 127  D 40 
D 128  A 41 
K 129  Q 42 
A 130  V 43 
K 131  K 44 
D 133  E 45 
A 134  V 46 
I 135  F 47 
F 136  E 48 
D 137  I 49 
S 138  L 50 
L 139  D 51 
S 140  K 52 
P 141  D 53 
V 142  Q 54 
N 143  S 55 
G 144  G 56 
F 145  F 57 
L 146  I 58 
S 147  E 59 
G 148  E 60 
D 149  E 61 
K 150  E 62 
V 151  L 63 
K 152  K 64 
P 153  G 65 
V 154  V 66 
L 155  L 67 
L 156  F 70 
N 157  S 71 
S 158  A 72 
K 159  H 73 
L 160  L 77 
P 161  N 78 
V 162  D 79 
D 163  T 80 
I 164  E 81 
L 165  T 82 
G 166  K 83 
R 167  A 84 
V 168  L 85 
W 169  L 86 
E 170  A 87 
L 171  A 88 
S 172  G 89 
D 173  D 90 
I 174  S 91 
D 175  D 92 
H 176  H 93 
D 177  D 94 
G 178  G 95 
M 179  K 96 
L 180  I 97 
D 181  G 98 
R 182  A 99 
D 183  D 100 
E 184  E 101 
F 185  F 102 
A 186  A 103 
V 187  K 104 
A 188  M 105 
M 189  V 106 
F 190  A 107 
L 191  Q 108 
V 192  A 109 
TER 
END 
