PFRMAT AL                                                                         
TARGET T0074                                                                      
REMARK =========================================================== 
AUTHOR 5601-8785-5692                                                             
REMARK Heinz Mevissen, GMD,                                                       
REMARK Ralf Thiele, GMD,                                                          
REMARK Ralf Zimmer, GMD,                                                          
REMARK German National Research Center for Information Technology                 
REMARK Institute for Algorithms and Scientific Computing                          
REMARK =========================================================== 
METHOD A reduced candidate list is produced via ToPLign [1]                       
METHOD sequence/profile alignments, 123D [2] and RDP [3].                         
METHOD The top scoring candidates from this list and the                          
METHOD corresponding refined alignments have been produced                        
METHOD with RDP [3] using newly derived modifications of                          
METHOD contact capacity [2] and pair interaction potentials.                      
METHOD References:                                                                
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer:    
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign",  
METHOD     GMD, 1994-98.                                                          
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:                     
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment     
METHOD     and Contact Capacity Potentials",                                      
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publishing Co., 
METHOD     1996, 53--72.                                                          
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:                       
METHOD     "Recursive Dynamic Programming for Adaptive Sequence                   
METHOD     and Structure Alignment",                                              
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.              
REMARK =========================================================== 
MODEL  1                                                                          
PARENT 1CFC                                                                       
K 125    D    78 
P 126    T    79 
E 127    D    80 
D 128    S    81 
K 129    E    82 
A 130    E    83 
K 131    E    84 
Y 132    I    85 
D 133    R    86 
A 134    E    87 
I 135    A    88 
F 136    F    89 
D 137    R    90 
S 138    V    91 
L 139    F    92 
S 140    D    93 
N 143    N    97 
G 144    G    98 
F 145    Y    99 
L 146    I   100 
S 147    S   101 
G 148    A   102 
D 149    A   103 
K 150    E   104 
V 151    L   105 
K 152    R   106 
P 153    H   107 
V 154    V   108 
L 155    M   109 
L 156    T   110 
S 158    E   114 
K 159    K   115 
L 160    L   116 
P 161    T   117 
V 162    D   118 
D 163    E   119 
I 164    E   120 
L 165    V   121 
G 166    D   122 
R 167    E   123 
V 168    M   124 
W 169    I   125 
E 170    R   126 
L 171    E   127 
S 172    A   128 
D 173    D   129 
I 174    I   130 
D 175    D   131 
H 176    G   132 
D 177    D   133 
G 178    G   134 
M 179    Q   135 
L 180    V   136 
D 181    N   137 
R 182    Y   138 
D 183    E   139 
E 184    E   140 
F 185    F   141 
A 186    V   142 
V 187    Q   143 
A 188    M   144 
M 189    M   145 
F 190    T   146 
TER                                                                               
END                                                                               
