PFRMAT AL 
TARGET T0075 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/13/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0075" has a significant match 
REMARK pdb1icw_A     5.411     0.221    12.908  MOLECULE: INTERLEUKIN-8; 
REMARK                                          SCOP: A+B; Interleukin 8-like chemokines 
REMARK pdb5pal       5.340     0.219     9.320  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1cgo       5.259     0.216     7.915  MOLECULE: CYTOCHROME C' 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb451c       4.971     0.207    10.212  CYTOCHROME $C=551= (REDUCED) 
REMARK                                          SCOP: Alpha; Cytochrome c 
REMARK pdb1rro       4.736     0.200    12.413  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1doi       4.538     0.193    -3.742  MOLECULE: 2FE-2S FERREDOXIN; 
REMARK                                          SCOP: A+B; beta-Grasp 
REMARK pdb1all_B     4.480     0.191    14.844  MOLECULE: ALLOPHYCOCYANIN; 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1cpq       4.394     0.189     0.834  MOLECULE: CYTOCHROME C'; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1maz       4.197     0.182    -8.223  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb1pdr       4.121     0.180     6.275  MOLECULE: HUMAN DISCS LARGE PROTEIN; 
REMARK                                          SCOP: Beta; PDZ domain 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0075        MECADVPLLTPSSKEMMSQALKATFSGFTKEQQRLGIPKDPRQWTETHVR 
REMARK                                                    |:. :| :.:#: 
REMARK pdb1icw_A    ......................................ELRCQCIKTYSK 
REMARK  
REMARK t0075        DWVMWAVNEFSL..KGVDFQKFCMSGAALCALGKECFLELAPDFVGDILW 
REMARK              :| .  |. |.|   |#.:::.||  #:#|  |::|:| ..|. : :||# 
REMARK pdb1icw_A    PFHPKFIKELRVIESGPHCANTCI..IVKLSDGRELALDPKENWVQRVVE 
REMARK  
REMARK t0075        EHLEILQKEDVK 
REMARK              | || : |.    
REMARK pdb1icw_A    KFLKRAENS... 
REMARK  
PARENT 1icw_A 
K 67  E 4 
D 68  L 5 
P 69  R 6 
R 70  C 7 
Q 71  Q 8 
W 72  C 9 
T 73  I 10 
E 74  K 11 
T 75  T 12 
H 76  Y 13 
V 77  S 14 
R 78  K 15 
D 79  P 16 
W 80  F 17 
V 81  H 18 
M 82  P 19 
W 83  K 20 
A 84  F 21 
V 85  I 22 
N 86  K 23 
E 87  E 24 
F 88  L 25 
S 89  R 26 
L 90  V 27 
K 91  S 30 
G 92  G 31 
V 93  P 32 
D 94  H 33 
F 95  C 34 
Q 96  A 35 
K 97  N 36 
F 98  T 37 
C 99  C 38 
M 100  I 39 
A 103  I 40 
A 104  V 41 
L 105  K 42 
C 106  L 43 
A 107  S 44 
L 108  D 45 
G 109  G 46 
K 110  R 47 
E 111  E 48 
C 112  L 49 
F 113  A 50 
L 114  L 51 
E 115  D 52 
L 116  P 53 
A 117  K 54 
P 118  E 55 
D 119  N 56 
F 120  W 57 
V 121  V 58 
G 122  Q 59 
D 123  R 60 
I 124  V 61 
L 125  V 62 
W 126  E 63 
E 127  K 64 
H 128  F 65 
L 129  L 66 
E 130  K 67 
I 131  R 68 
L 132  A 69 
Q 133  E 70 
K 134  N 71 
E 135  S 72 
TER 
END 
