PFRMAT AL 
TARGET T0075 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/13/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,329 domain-based structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0075" has a significant match 
REMARK 1delAb_A      5.463     0.247    15.836  MOLECULE: DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE; 
REMARK                                          SCOP: A/B; P-loop containing nucleotide triphosphate hydrolases 
REMARK 1aqvAb_A      4.900     0.227    16.709  MOLECULE: GLUTATHIONE S-TRANSFERASE; 
REMARK 1ghsAb_A      4.754     0.222     9.617  1,3-BETA-GLUCANASE (E.C.3.2.1.39) 
REMARK                                          SCOP: A/B; beta/alpha (TIM)-barrel 
REMARK pdb1jaf_A     4.432     0.211    15.067  MOLECULE: CYTOCHROME C'; 
REMARK pdb1rtp_1     4.418     0.210     5.304  ALPHA-PARVALBUMIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1rro       4.115     0.200    12.413  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK 1gsdAb_A      4.077     0.198     1.830  MOLECULE: GLUTATHIONE TRANSFERASE A1-1; 
REMARK                                          SCOP: 2-80: A/B; Thioredoxin-like 
REMARK                                          SCOP: 81-209: Alpha; Glutathione S-transferases, C-terminal domain 
REMARK pdb1af3       3.878     0.191     8.864  MOLECULE: APOPTOSIS REGULATOR BCL-X; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK 1liaBa_B      3.688     0.185    11.254  MOLECULE: R-PHYCOERYTHRIN; 
REMARK 1isaAb_A      3.484     0.177    -6.201  IRON(II) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK 1ao7Aa_A      3.367     0.173     5.577  MOLECULE: HLA-A 0201; 
MODEL  2 
REMARK Sequence alignment follows: 
REMARK t0075        .......MECADVPLLTPSSKEMMSQALKATFSGF.TKEQQRLGIPKDPR 
REMARK                      |:|   | . : :. ...  |  ::|   : |.:|:|  .|. 
REMARK 1delAb_A     YQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYDRETNLNL..TKL 
REMARK  
REMARK t0075        QWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDF 
REMARK              || |  |   |:.|.:| .|.|| ...  ..# .|.   :|#|.| |.|  
REMARK 1delAb_A     EVITI.MEQAFCYLNGKSPIKGVFVFDD.EGKESVNFVAFNKITDVINNI 
REMARK  
REMARK t0075        VGDILWEHL.EILQKEDVK........... 
REMARK              # || |:|| ||| ||#|:            
REMARK 1delAb_A     EDQWSVRRLMQALGTDLIVNNFDRMYWVKL 
REMARK  
PARENT 1del_A 
M 29  K 37 
E 30  D 38 
C 31  A 39 
A 32  L 40 
D 33  A 41 
V 34  Y 42 
P 35  A 43 
L 36  W 44 
L 37  G 45 
T 38  V 46 
P 39  F 47 
S 40  A 48 
S 41  A 49 
K 42  N 50 
E 43  T 51 
M 44  D 52 
M 45  Y 53 
S 46  P 54 
Q 47  C 55 
A 48  L 56 
L 49  T 57 
K 50  R 58 
A 51  K 59 
T 52  E 60 
F 53  F 61 
S 54  E 62 
G 55  G 63 
F 56  I 64 
T 57  Y 66 
K 58  D 67 
E 59  R 68 
Q 60  E 69 
Q 61  T 70 
R 62  N 71 
L 63  L 72 
G 64  N 73 
I 65  L 74 
D 68  T 75 
P 69  K 76 
R 70  L 77 
Q 71  E 78 
W 72  V 79 
T 73  I 80 
E 74  T 81 
T 75  I 82 
V 77  M 83 
R 78  E 84 
D 79  Q 85 
W 80  A 86 
V 81  F 87 
M 82  C 88 
W 83  Y 89 
A 84  L 90 
V 85  N 91 
N 86  G 92 
E 87  K 93 
F 88  S 94 
S 89  P 95 
L 90  I 96 
K 91  K 97 
G 92  G 98 
V 93  V 99 
D 94  F 100 
F 95  V 101 
Q 96  F 102 
K 97  D 103 
F 98  D 104 
M 100  E 105 
S 101  G 106 
G 102  K 107 
A 103  E 108 
A 104  S 109 
L 105  V 110 
C 106  N 111 
A 107  F 112 
L 108  V 113 
G 109  A 114 
K 110  F 115 
E 111  N 116 
C 112  K 117 
F 113  I 118 
L 114  T 119 
E 115  D 120 
L 116  V 121 
A 117  I 122 
P 118  N 123 
D 119  N 124 
F 120  I 125 
V 121  E 126 
G 122  D 127 
D 123  Q 128 
I 124  W 129 
L 125  S 130 
W 126  V 131 
E 127  R 132 
H 128  R 133 
L 129  L 134 
E 130  Q 136 
I 131  A 137 
L 132  L 138 
Q 133  G 139 
K 134  T 140 
E 135  D 141 
D 136  L 142 
V 137  I 143 
K 138  V 144 
TER 
END 
