PFRMAT AL 
TARGET T0075 
AUTHOR 5529-3140-9255 
REMARK Prediction team BENNER-COHEN has two group leaders, 
REMARK but we will consistently use Steven Benner's predictor 
REMARK number to avoid confusion concerning a second team 
REMARK connected with Fred Cohen (called Cohen, Fred). 
REMARK (Fred Cohen's number as a group leader is 6140-7890-6093). 
REMARK Prediction team members: D.L.Gerloff, G.Cannarozzi, 
REMARK M.Joachimiak, F.E.Cohen & S.A.Benner. 
REMARK 
REMARK This threading alignment prediction is NOT accompanied by 
REMARK a separate secondary structure submission !! 
METHOD 
METHOD AS THE C-TERMINAL PART HAS SOME SEQUENCE SIMILARITY TO THE 
METHOD HELIX-LOOP-HELIX PROTEINS (SETH & PAPAS, ONCOGENE (1990), 5:1761-1767)  
METHOD WE ARE SUBMITTING THE SUGGESTED THREADING ALIGNMENT WITH A MEMBER OF 
METHOD THE bHLH PROTEINS (1AN4, USF1) AS A SECOND ALTERNATIVE. IF THE TARGET 
METHOD PROTEIN OCCURRED AT A DIMER, ONE WOULD HAVE TO START FROM THE HLH- 
METHOD FRAGMENT AND PACK A FRAGMENT SIMILAR TO A PART OF MODEL1:75-100  
METHOD AGAINST THE SIDE NOT OCCUPIED BY DIMER-INTERACTIONS. DUE TO TIME 
METHOD PRESSURE, WE WILL NOT BE ABLE TO MODEL THIS ALTERNATIVE IN COORDINATE 
METHOD FORMAT. 
METHOD OUR FAVORITE MODEL IS NUMBER ONE, SUBMITTED PREVIOUSLY, 
METHOD AND WE HAVE NO INDICATIONS FROM THE 
METHOD LITERATURE THAT T0075 IS A MANDATORY OLIGOMER. IN FACT, WE FOUND THE 
METHOD SOME REMARKS IN THE LITERATURE THAT THE ETS1 PROTEIN (FULL PROTEIN) 
METHOD APPEARS TO BE CAPABLE OF BINDING TO DNA AS A MONOMER. 
METHOD 
MODEL  2 
PARENT 1an4_A 
K   97   K   214 
F   98   I   215 
C   99   N   216 
M   100   N   217 
G   102   W   218 
A   103   I   219 
A   104   V   220 
L   105   Q   221 
C   106   L   222 
A   107   S   223 
L   108   K   224 
G   109   I   225 
D   123   G   242 
I   124   I   243 
L   125   L   244 
W   126   S   245 
E   127   K   246 
H   128   A   247 
L   129   S   248 
E   130   D   249 
I   131   Y   250 
L   132   I   251 
Q   133   Q   252 
TER 
END 
