PFRMAT AL                                                                         
TARGET T0075                                                                      
REMARK ================================================================ 
AUTHOR 5601-8785-5692                                                             
REMARK Heinz Mevissen, GMD,                                                       
REMARK Ralf Thiele, GMD,                                                          
REMARK Ralf Zimmer, GMD,                                                          
REMARK German National Research Center for Information Technology                 
REMARK Institute for Algorithms and Scientific Computing                          
REMARK ================================================================ 
METHOD A reduced candidate list is produced via ToPLign [1]                       
METHOD sequence/profile alignments, 123D [2] and RDP [3].                         
METHOD The top scoring candidates from this list and the                          
METHOD corresponding refined alignments have been produced                        
METHOD with RDP [3] using newly derived modifications of                          
METHOD contact capacity [2] and pair interaction potentials.                      
METHOD References:                                                                
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer:    
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign",  
METHOD     GMD, 1994-98.                                                          
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:                     
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment     
METHOD     and Contact Capacity Potentials",                                      
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publ. Co., 
METHOD     1996, 53--72.                                                          
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:                       
METHOD     "Recursive Dynamic Programming for Adaptive Sequence                   
METHOD     and Structure Alignment",                                              
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.              
REMARK ================================================================ 
MODEL  2                                                                          
PARENT 6ICB                                                                       
P  39    M     0 
S  40    K     1 
S  41    S     2 
K  42    P     3 
E  43    E     4 
M  44    E     5 
M  45    L     6 
S  46    K     7 
Q  47    G     8 
A  48    I     9 
L  49    F    10 
K  50    E    11 
A  51    K    12 
T  52    Y    13 
F  53    A    14 
S  54    A    15 
K  67    G    18 
D  68    D    19 
P  69    P    20 
R  70    N    21 
Q  71    Q    22 
W  72    L    23 
T  73    S    24 
E  74    K    25 
T  75    E    26 
H  76    E    27 
V  77    L    28 
R  78    K    29 
D  79    L    30 
W  80    L    31 
V  81    L    32 
M  82    Q    33 
W  83    T    34 
E  87    E    35 
F  88    F    36 
S  89    L    39 
L  90    L    40 
K  91    K    41 
G  92    G    42 
K 110    D    47 
E 111    E    48 
C 112    L    49 
F 113    F    50 
L 114    E    51 
E 115    E    52 
L 116    L    53 
A 117    D    54 
P 118    K    55 
D 119    N    56 
F 120    G    57 
V 121    D    58 
G 122    G    59 
D 123    E    60 
I 124    V    61 
L 125    S    62 
W 126    F    63 
E 127    E    64 
H 128    E    65 
L 129    F    66 
E 130    Q    67 
I 131    V    68 
L 132    L    69 
Q 133    V    70 
K 134    K    71 
E 135    K    72 
TER                                                                               
END                                                                               
