PFRMAT AL 
TARGET T0076 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_10%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 2bbn_A 
S    1 E    6 
T    2 E    7 
D    3 Q    8 
D    4 I    9 
S    5 A   10 
P    6 E   11 
Y    7 F   12 
K    8 K   13 
Q    9 E   14 
A   10 A   15 
F   11 F   16 
S   12 S   17 
L   13 L   18 
F   14 F   19 
D   15 D   20 
R   16 K   21 
H   17 D   22 
G   18 G   23 
T   19 D   24 
G   20 G   25 
R   21 T   26 
I   22 I   27 
P   23 T   28 
K   24 T   29 
T   25 K   30 
S   26 E   31 
I   27 L   32 
G   28 G   33 
D   29 T   34 
L   30 V   35 
L   31 M   36 
R   32 R   37 
A   33 S   38 
C   34 L   39 
G   35 G   40 
Q   36 Q   41 
N   37 N   42 
P   38 P   43 
T   39 T   44 
L   40 E   45 
A   41 A   46 
E   42 E   47 
I   43 L   48 
T   44 Q   49 
E   45 D   50 
I   46 M   51 
E   47 I   52 
S   48 N   53 
T   49 E   54 
L   50 V   55 
P   51 D   56 
A   52 A   57 
E   53 D   58 
V   54 G   59 
D   55 N   60 
M   56 G   61 
E   57 T   62 
Q   58 I   63 
F   59 D   64 
L   60 F   65 
Q   61 P   66 
V   62 E   67 
L   63 F   68 
N   64 L   69 
R   65 T   70 
P   66 M   71 
N   67 M   72 
G   68 A   73 
F   69 R   74 
D   70 K   75 
M   71 M   76 
P   72 K   77 
G   73 D   78 
D   74 S   81 
P   75 E   82 
E   76 E   83 
E   77 E   84 
F   78 I   85 
V   79 R   86 
K   80 E   87 
G   81 A   88 
F   82 F   89 
Q   83 R   90 
V   84 V   91 
F   85 F   92 
D   86 D   93 
K   87 K   94 
D   88 D   95 
A   89 G   96 
T   90 N   97 
G   91 G   98 
M   92 F   99 
I   93 I  100 
G   94 S  101 
V   95 A  102 
G   96 A  103 
E   97 E  104 
L   98 L  105 
R   99 R  106 
Y  100 H  107 
V  101 V  108 
L  102 M  109 
T  103 T  110 
S  104 N  111 
L  105 L  112 
G  106 G  113 
E  107 E  114 
K  108 K  115 
L  109 L  116 
S  110 T  117 
N  111 D  118 
E  112 E  119 
E  113 E  120 
M  114 V  121 
D  115 D  122 
E  116 E  123 
L  117 M  124 
L  118 I  125 
K  119 R  126 
G  120 E  127 
V  121 A  128 
P  122 D  129 
V  123 I  130 
K  124 D  131 
D  125 G  132 
G  126 G  134 
M  127 Q  135 
V  128 V  136 
N  129 N  137 
Y  130 Y  138 
H  131 E  139 
D  132 E  140 
F  133 F  141 
V  134 V  142 
Q  135 T  143 
M  136 M  144 
I  137 M  145 
L  138 T  146 
A  139 S  147 
N  140 K  148 
TER 
END 
