 
PFRMAT AL 
TARGET T0079 
AUTHOR 4139-4764-1095 
METHOD 1) Blast was used to find homologues to the target, and   
METHOD    a multiple sequence alignment was constructed from 
METHOD    these sequences. 
METHOD 2) Secondary structure was predicted with predator. 
METHOD 3) A hidden Markov model using both secondary structure and 
METHOD    sequence information was built from the alignment and 
METHOD    run against a database containing a set of sequences with 
METHOD    known structure. 
METHOD 4) The sequence giving the best alignment was chosen among   
METHOD    those with high scores. 
MODEL 3 
REMARK The parent-none fields below really just indicate 
REMARK that the corresponding residues are not aligned 
PARENT 2hmx 
M   1	H   1 
T   2	M   2 
M   3	G   3 
S   4	A   4 
R   5	R   5 
R   6	A   6 
N   7	S   7 
T   8	V   8 
D   9	L   9 
A  10	S  10 
I  11	G  11 
T  12	G  12 
I  13	E  13 
H  14	L  14 
S  15	D  15 
I  16	K  16 
L  17	W  17 
D  18	E  18 
W  19	K  19 
I  20	I  20 
E  21	R  21 
D  22	L  22 
N  23	R  23 
L  24	P  24 
E  25	G  25 
S  26	G  26 
P  27	K  27 
L  28	Y  30 
S  29	K  31 
L  30	L  32 
E  31	K  33 
K  32	H  34 
V  33	I  35 
S  34	V  36 
E  35	W  37 
R  36	A  38 
S  37	S  39 
G  38	R  40 
Y  39	E  41 
S  40	L  42 
K  41	E  43 
W  42	R  44 
H  43	F  45 
L  44	A  46 
Q  45	V  47 
R  46	N  48 
M  47	P  49 
F  48	G  50 
K  49	L  51 
K  50	L  52 
E  51	E  53 
T  52	T  54 
G  53	G  57 
H  54	C  58 
S  55	R  59 
L  56	Q  60 
G  57	I  61 
Q  58	L  62 
Y  59	G  63 
I  60	Q  64 
R  61	L  65 
S  62	Q  66 
R  63	P  67 
K  64	S  68 
M  65	L  69 
T  66	Q  70 
E  67	T  71 
I  68	G  72 
A  69	S  73 
Q  70	E  74 
K  71	E  75 
L  72	L  76 
K  73	R  77 
E  74	S  78 
S  75	L  79 
N  76	Y  80 
E  77	N  81 
P  78	T  82 
I  79	I  83 
L  80	A  84 
Y  81	V  85 
L  82	L  86 
A  83	Y  87 
E  84	C  88 
R  85	V  89 
Y  86	H  90 
G  87	Q  91 
F  88	R  92 
E  89	D  97 
S  90	T  98 
Q  91	K  99 
Q  92	E 100 
T  93	A 101 
L  94	L 102 
T  95	D 103 
R  96	K 104 
T  97	I 105 
F  98	E 106 
K  99	E 107 
N 100	E 108 
Y 101	Q 109 
F 102	N 110 
D 103	K 111 
V 104	S 112 
P 105	K 113 
P 106	K 114 
H 107	K 115 
K 108	A 116 
Y 109	Q 117 
R 110	Q 118 
M 111	A 119 
T 112	A 120 
N 113	A 121 
M 114	D 122 
Q 115	T 123 
G 116	G 124 
E 117	N 125 
S 118	N 126 
R 119	S 127 
F 120	Q 128 
L 121	V 129 
H 126	S 130 
Y 127	Q 131 
N 128	N 132 
S 129	Y 133 
TER 
END 
