PFRMAT AL 
TARGET T0079 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/17/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0079" has a significant match 
REMARK pdb1lea       5.058     0.248    22.952  LEXA REPRESSOR DNA BINDING DOMAIN 
REMARK                                          SCOP: Alpha; DNA-binding 3-helical bundle 
REMARK pdb1rro       4.982     0.245     8.524  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1nkl       4.146     0.214    17.995  MOLECULE: NK-LYSIN; 
REMARK                                          SCOP: Alpha; Saposin 
REMARK pdb1flp       3.986     0.208     8.216  HEMOGLOBIN I (MONOMERIC) (FERRIC) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1cei       3.960     0.207     7.732  MOLECULE: COLICIN E7 IMMUNITY PROTEIN; 
REMARK                                          SCOP: Alpha; Acyl carrier protein 
REMARK pdb1ith_A     3.917     0.205    15.291  HEMOGLOBIN (CYANOMET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb256b_A     3.870     0.204    13.046  CYTOCHROME $B562 (OXIDIZED) 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb1ngr       3.752     0.199     7.053  MOLECULE: P75 LOW AFFINITY NEUROTROPHIN RECEPTOR; 
REMARK                                          SCOP: Alpha; DEATH domain 
REMARK pdb5pal       3.588     0.193     8.432  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1jon       3.525     0.191    10.017  MOLECULE: GROEL, HSP60 CLASS; 
REMARK                                          SCOP: A/B; The "swivelling" beta/beta/alpha domain 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0079        MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 
REMARK                                                                 
REMARK pdb1lea      .................................................. 
REMARK  
REMARK t0079        ETGHSLGQYIRSRKMTEIAQKLKESNE...PILYLAERYGFESQQTLTRT 
REMARK                 |.| :..|  || :||:|..| ::   |  ||.||.||| .: |.:. 
REMARK pdb1lea      ..MKALTARQQ..EVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEH 
REMARK  
REMARK t0079        FKNYFDVPPHKYRMTNMQGESRFLHPLNHYNS 
REMARK              |:.|.: .     |:. :|. |:| || :|.  
REMARK pdb1lea      LKALARKGV....IEIVSGASRGI.RLLQEE. 
REMARK  
PARENT 1lea 
G 53  M 1 
H 54  K 2 
S 55  A 3 
L 56  L 4 
G 57  T 5 
Q 58  A 6 
Y 59  R 7 
I 60  Q 8 
R 61  Q 9 
K 64  E 10 
M 65  V 11 
T 66  F 12 
E 67  D 13 
I 68  L 14 
A 69  I 15 
Q 70  R 16 
K 71  D 17 
L 72  H 18 
K 73  I 19 
E 74  S 20 
S 75  Q 21 
N 76  T 22 
E 77  G 23 
P 78  T 27 
I 79  R 28 
L 80  A 29 
Y 81  E 30 
L 82  I 31 
A 83  A 32 
E 84  Q 33 
R 85  R 34 
Y 86  L 35 
G 87  G 36 
F 88  F 37 
E 89  R 38 
S 90  S 39 
Q 91  P 40 
Q 92  N 41 
T 93  A 42 
L 94  A 43 
T 95  E 44 
R 96  E 45 
T 97  H 46 
F 98  L 47 
K 99  K 48 
N 100  A 49 
Y 101  L 50 
F 102  A 51 
D 103  R 52 
V 104  K 53 
P 105  G 54 
P 106  V 55 
M 111  I 56 
T 112  E 57 
N 113  I 58 
M 114  V 59 
Q 115  S 60 
G 116  G 61 
E 117  A 62 
S 118  S 63 
R 119  R 64 
F 120  G 65 
L 121  I 66 
P 123  R 67 
L 124  L 68 
N 125  L 69 
H 126  Q 70 
Y 127  E 71 
N 128  E 72 
TER 
END 
