PFRMAT AL 
TARGET T0080 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/20/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0080" has a significant match 
REMARK pdb1isc_A     6.747     0.199     6.726  IRON(III) SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-82: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 83-192: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1aky       4.232     0.139    11.893  MOLECULE: ADENYLATE KINASE; 
REMARK                                          SCOP: A/B; P-loop containing nucleotide triphosphate hydrolases 
REMARK pdb1maz       4.049     0.134    -3.240  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb1ad2       4.018     0.134    -0.620  MOLECULE: RIBOSOMAL PROTEIN L1; 
REMARK                                          SCOP: Multi; Ribosomal protein L1 
REMARK pdb1mng_A     4.004     0.133   -12.207  MANGANESE SUPEROXIDE DISMUTASE (E.C.1.15.1.1) COMPLEXED 
REMARK                                          SCOP: 1-92: Alpha; Long alpha-hairpin 
REMARK                                          SCOP: 93-203: A+B; Fe,Mn superoxide dismutase (SOD), C-terminal domain 
REMARK pdb1aep       3.934     0.132    12.652  APOLIPOPHORIN III 
REMARK                                          SCOP: Alpha; Apolipophorin-III 
REMARK pdb2tct       3.862     0.130    -9.651  MOLECULE: TETRACYCLINE REPRESSOR; 
REMARK                                          SCOP: Alpha; Tetracyclin repressor (Tet-repressor, TetR) 
REMARK pdb1ofv       3.722     0.126    -5.499  FLAVODOXIN (OXIDIZED FORM) 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb2abk       3.624     0.124     0.971  MOLECULE: ENDONUCLEASE III; 
REMARK                                          SCOP: Alpha; Endonuclease III 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0080        ...............................................KGH 
REMARK                                                             :|. 
REMARK pdb1isc_A    SFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGK 
REMARK  
REMARK t0080        .LTRLGLEFFDQPAVP.LARAFLGQVLVRRL..PNGTELRGRIVET.EAY 
REMARK               |.:| |:.:: :|.  ||:|.. :.|:| |  :.| :|.||| |  ::. 
REMARK pdb1isc_A    SLEEI.IRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAAS 
REMARK  
REMARK t0080        LGPEDEAAHSRGGRQTPRN.RGMFM....KPGTLYVYIIYGMYFCMNISS 
REMARK              ||. :||:     .  :   :|:||    |:| |:|.     | | .|:  
REMARK pdb1isc_A    FGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVS....TSNAGTPL 
REMARK  
REMARK t0080        QGDG.ACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKD.RELCSGPSK 
REMARK              :||  |||:|.   .|  :|| :: . .|:|  ..  ||  :|..|.    
REMARK pdb1isc_A    TTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA... 
REMARK  
REMARK t0080        LCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVVAAARVGVGHAGEW 
REMARK                                                                 
REMARK pdb1isc_A    .................................................. 
REMARK  
REMARK t0080        ARKPLRFYVRGSPWVSVVDRVAEQDTQA 
REMARK                                           
REMARK pdb1isc_A    ............................ 
REMARK  
PARENT 1isc_A 
K 80  E 48 
G 81  G 49 
H 82  K 50 
L 83  L 52 
T 84  E 53 
R 85  E 54 
L 86  I 55 
L 88  I 56 
E 89  R 57 
F 90  S 58 
F 91  S 59 
D 92  E 60 
Q 93  G 61 
P 94  G 62 
A 95  V 63 
V 96  F 64 
P 97  N 65 
L 98  A 67 
A 99  A 68 
R 100  Q 69 
A 101  V 70 
F 102  W 71 
L 103  N 72 
G 104  H 73 
Q 105  T 74 
V 106  F 75 
L 107  Y 76 
V 108  W 77 
R 109  N 78 
R 110  C 79 
L 111  L 80 
P 112  N 83 
N 113  A 84 
G 114  G 85 
T 115  G 86 
E 116  E 87 
L 117  P 88 
R 118  T 89 
G 119  G 90 
R 120  K 91 
I 121  V 92 
V 122  A 93 
E 123  E 94 
T 124  A 95 
E 125  A 97 
A 126  A 98 
Y 127  S 99 
L 128  F 100 
G 129  G 101 
P 130  S 102 
E 131  F 103 
D 132  A 104 
E 133  D 105 
A 134  F 106 
A 135  K 107 
H 136  A 108 
S 137  Q 109 
R 138  F 110 
G 139  T 111 
G 140  D 112 
R 141  A 113 
Q 142  A 114 
T 143  I 115 
P 144  K 116 
R 145  N 117 
N 146  F 118 
R 147  S 120 
G 148  G 121 
M 149  W 122 
F 150  T 123 
M 151  W 124 
K 152  S 129 
P 153  D 130 
G 154  G 131 
T 155  K 132 
L 156  L 133 
Y 157  A 134 
V 158  I 135 
Y 159  V 136 
I 160  S 137 
Y 165  T 138 
F 166  S 139 
C 167  N 140 
M 168  A 141 
N 169  G 142 
I 170  T 143 
S 171  P 144 
S 172  L 145 
Q 173  T 146 
G 174  T 147 
D 175  D 148 
G 176  A 149 
A 177  P 151 
C 178  L 152 
V 179  L 153 
L 180  T 154 
L 181  V 155 
R 182  D 156 
A 183  V 157 
L 184  W 158 
E 185  E 159 
P 186  H 160 
L 187  A 161 
E 188  Y 162 
G 189  Y 163 
L 190  I 164 
E 191  D 165 
T 192  Y 166 
M 193  R 167 
R 194  N 168 
Q 195  A 169 
L 196  R 170 
R 197  P 171 
S 198  G 172 
T 199  Y 173 
L 200  L 174 
R 201  E 175 
K 202  H 176 
G 203  F 177 
T 204  W 178 
A 205  A 179 
S 206  L 180 
R 207  V 181 
V 208  N 182 
L 209  W 183 
K 210  E 184 
D 211  F 185 
R 212  A 187 
E 213  K 188 
L 214  N 189 
C 215  L 190 
S 216  A 191 
G 217  A 192 
TER 
END 
