 
PFRMAT AL 
TARGET T0080 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK t0080.pep                  7 GHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAY... 
REMARK PIR:E70152                 5 .........FFLQDATTVAKLLLGNLLIRKI.DKEEIVTRIVETEAY... 
REMARK GP:MTCI125_9               1 .....MNAEELAIDPVAAAHRLLGATIAGR.....GVRAMVVEVEAYGGV 
REMARK GP:MLCB1351_17            46 CKICAVSADQLVVDPVVAAHRLLGATITGR.....GVCAIVVEVEAYGGV 
REMARK SW:3MG_MOUSE             106 .....LGPEFFDQPAVTLARAFLGQVLVRRLADGTELRGRIVETEAY... 
REMARK GP:S81120S4_1            106 .....LGPEFFDQPAVTLARAFLGQVLVRRLADGTELRGRIVETEAY... 
REMARK GP:HSANPG_1               18 .....LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAY... 
REMARK GP:HSRA36_1               86 .....LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAY... 
REMARK PIR:A40798                59 .....LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAY... 
REMARK PIR:A47471                81 .....LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAY... 
REMARK SW:3MG_HUMAN              86 .....LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAY... 
REMARK PIR:JN0062                18 .....LGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAY... 
REMARK SW:3MG_ARATH              56 ..MKLMPPEFFQIDALDLAPRLLGKFMRR.....DNVVLRITEVEAY... 
REMARK PIR:D70082                 4 .EKNPLPITFYQKTALELAPSLLGCLLVKE.TDEGTASGYIVETEAY... 
REMARK SW:3MG_RAT                92 .....LGPEYFDQPAVTLARAFLGQVLVRRLADGTELRGRIVETEAY... 
REMARK PIR:S12059                51 .....LGPEYFDQPAVTLARAFLGQVLVRRLADGTELRGRIVETEAY... 
REMARK    
REMARK t0080.pep                 49 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNI.. 
REMARK PIR:E70152                42 .....MGITDSACHSYGGKITNRTSAMYRIGGYSYVYIIYGMHYMFNVVT 
REMARK GP:MTCI125_9              41 PDGPWPDAAAHSYRGRNG....RNDVMFGPPGRLYTYRSHGIHVCANVAC 
REMARK GP:MLCB1351_17            91 PDGPWPDAAAHSYHGRND....RNAVMFGPPGRLYTYCSHGIHVCANVSC 
REMARK SW:3MG_MOUSE             148 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYLIYGMYFCLNV.. 
REMARK GP:S81120S4_1            148 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYLIYGMYFCLNV.. 
REMARK GP:HSANPG_1               60 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNI.. 
REMARK GP:HSRA36_1              128 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNI.. 
REMARK PIR:A40798               101 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNI.. 
REMARK PIR:A47471               123 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNI.. 
REMARK SW:3MG_HUMAN             128 .....LGPEDEPAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNI.. 
REMARK PIR:JN0062                60 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNI.. 
REMARK SW:3MG_ARATH              96 ......RPNDSACHGRFG.VTPRTAPVFGPGGHAYVYLCYGLHMMLNIVA 
REMARK PIR:D70082                49 .....MGAGDRAAHSFNNRRTKRTEIMFAEAGRVYTYVMHT.HTLLNVVA 
REMARK SW:3MG_RAT               134 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYLIYGMYFCLNV.. 
REMARK PIR:S12059                93 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYLIYGMYFCLNV.. 
REMARK    
REMARK t0080.pep                 92 SSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSK 
REMARK PIR:E70152                87 ADKNNPQAVLIRSVEPISPLLGEKS.................ILTNGPGK 
REMARK GP:MTCI125_9              87 GPDGTAAAVLLRAAAIEDGAELATS.....RRGQTVRAV...ALARGPGN 
REMARK GP:MLCB1351_17           137 GPDGTAAAVLIRAGALENGADVARS.....RRGASVRTV...ALARGPGN 
REMARK SW:3MG_MOUSE             191 SSQGAGACVLLRALEPLEGLETMRQLRNSLRKSTVGRSLKDRELCSGPSK 
REMARK GP:S81120S4_1            191 SSQGAGACVLLRALEPLEGLETMRQLRNSLRKSTVGRSLKDRELCSGPSK 
REMARK GP:HSANPG_1              103 SSQGDGACVLLRALEPLEGLETMRHVRSTLRKGTASRVLKDRELCSGPSK 
REMARK GP:HSRA36_1              171 SSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSK 
REMARK PIR:A40798               144 SSQGDGACVLLRALEPLEGLETMRHVRSTLRKGTASRVLKDRELCSGPSK 
REMARK PIR:A47471               166 SSQGDGACVLLRALEPLEGLETMRHVRSTLRKGTASRVLKDRELCSGPSK 
REMARK SW:3MG_HUMAN             171 SSQGDGACVLLRALEPLEGLETMRHVRSTLRKGTASRVLKDRELCSGPSK 
REMARK PIR:JN0062               103 SSQGDGACVLLRALEPLEGLETMRHVRSTLRKGTASRVLKDRELCSGPSK 
REMARK SW:3MG_ARATH             139 DKEGVGAAVLIRSCSPVSGMETIQE.RRGLKTDKPV.......LLNGPGK 
REMARK PIR:D70082                93 AEEDVPQAVLIRAIEPHEGQLLMEE.R...RPGRSPR.....EWTNGPGK 
REMARK SW:3MG_RAT               177 SSQGAGACVLLRALEPLEGLETMRQLRNSLRKSTVGRSLKDRELCNGPSK 
REMARK PIR:S12059               136 SSQGAGACVLLRALEPLEGLETMRQLRNSLRKSTVGRSLKDRELCNGPSK 
REMARK    
REMARK t0080.pep                142 LCQALAINKSFDQRDL.AQDEAVWLERGPLEPSE....PAVVAAARVGVG 
REMARK PIR:E70152               120 LTKFLNIDLTFNKVDLIGNNE.LFLQRGLNLDFN......IVCSKRININ 
REMARK GP:MTCI125_9             129 LCAALGITMADNGIDLFDPSSPVRLRLNDTHRAR........SGPRVGVS 
REMARK GP:MLCB1351_17           179 LCSALGITMDDNGIDVFAADSPVTLVLNEAQEAM........SGPRVGIS 
REMARK SW:3MG_MOUSE             241 LCQALAIDKSFDQRDL.AQDDAVWLEHGPLESSS...PAVVVAAARIGIG 
REMARK GP:S81120S4_1            241 LCQALAIDKSFDQRDL.AQDDAVWLEHGPLESSS...PAVVVAAARIGIG 
REMARK GP:HSANPG_1              153 LCQALAINKSFDQRDL.AQDEAVWLERGPLEPSE....PAVVAAARVGVG 
REMARK GP:HSRA36_1              221 LCQALAINKSFDQRDL.AQDEAVWLERGPLEPSE....PAVVAAARVGVG 
REMARK PIR:A40798               194 LCQALAINKSFDQRDL.AQDEAVWLERGPLEPSE....PAVVAAARVGVG 
REMARK PIR:A47471               216 LCQALAINKSFDQRDL.AQDEAVWLERGPLEPSE....PAVVAAARVGVG 
REMARK SW:3MG_HUMAN             221 LCQALAINKSFDQRDL.AQDEAVWLERGPLEPSE....PAVVAAARVGVG 
REMARK PIR:JN0062               153 LCQALAINKSFDQRDL.AQDEAVWLERGPLEPSE....PAVVAAARVGVG 
REMARK SW:3MG_ARATH             181 VGQALGLSTEWSHHPLYSPGG.LELLDGGEDVEK......VMVGPRVGID 
REMARK PIR:D70082               134 LTKALGVTMN........DYG.RWITEQPLYIESGYTPEAISTGPRIGID 
REMARK SW:3MG_RAT               227 LCQALARSKSFDQRDL.AQDEAVWLEHGPLESSS.....PAVVAAAAGIG 
REMARK PIR:S12059               186 LCQALARSKSFDQRDL.AQDEAV........................... 
REMARK    
REMARK t0080.pep                187 HA.GEWARKPLRFYVRGSPWVSV...VDRVAEQDTQA 
REMARK PIR:E70152               163 YAQESDINKLWRFYIKDNKFVS............... 
REMARK GP:MTCI125_9             171 QA....ADRPWRLWLTGRPEVSAYRRSSRAPARGA.. 
REMARK GP:MLCB1351_17           221 HA....ADRPWRLWLPGRPEVSTYRRSPRAPAPGAS. 
REMARK SW:3MG_MOUSE             287 HA.GEWTQKPLRFYVQGSPWVSV...VDRVAEQMDQP 
REMARK GP:S81120S4_1            287 HA.GEWTQKPLRFYVQGSPWVSV...VDRVAEQMDQP 
REMARK GP:HSANPG_1              198 HA.GEWARKPLRFYVRGSPWVSV...VDRVAEQDTQA 
REMARK GP:HSRA36_1              266 HA.GEWARKPLRFYVRGSPWVSV...VDRVAEQDTQA 
REMARK PIR:A40798               239 HA.GEWARKPLRFYVRGSPWVSV...VDRVAEQDTQA 
REMARK PIR:A47471               261 HA.GEWARKPLRFYVRGSPWVSV...VDRVAEQDTQA 
REMARK SW:3MG_HUMAN             266 HA.GEWARKPLRFYVRGSPWVSV...VDRVAEQDTQA 
REMARK PIR:JN0062               198 HA.GEWARKPLRFYVRGSPWESV...VDRVAEQDTQA 
REMARK SW:3MG_ARATH             224 YALPEHVNALWRFAVADTPWISAPKNTLKP....... 
REMARK PIR:D70082               175 NS.GEARDYPWRFWVTGNRYVS............... 
REMARK SW:3MG_RAT               271 HA.GEWTQKPLRFYVQGSPWVSV...VDRVAEQMYQP 
REMARK PIR:S12059               208 ..................................... 
REMARK    
REMARK Search results: 
REMARK             Profile : t0080_nt.prf 
REMARK             Length  : 184 
REMARK             alignment method = FIT_PRF 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1opc                +   6.56   1.39   99. !  Resolution=1.95   99 residues MOL_ID: 1; 
REMARK pdb90:1aisB               +   6.56   1.39  193. ! Resolution=2.10  193 residues MOL_ID: 1; 
REMARK pdb90:1pjr                +   6.14   1.30  623. !  Resolution=2.50  623 residues MOL_ID: 1; 
REMARK pdb90:1aep                +   6.00   1.27  153. !  Resolution=2.70  153 residues APOLIPOPHORIN III 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0080.pep                 49 .....LGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMY.FCMNI. 
REMARK 1AISB                      1 ...........................................NLAFALS 
REMARK   Consensus               51 PDGPWMGPDDHACHGRGGRITPRTRVMFGPPGRLYVYIIYGMH.FCLDVV 
REMARK    
REMARK t0080.pep                 92 .SSQGDGACVLLRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPS 
REMARK 1AISB                      8 ELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVY..AA 
REMARK   Consensus              101 CGDEGTPQCVLLRAVEPIDGLEVMRELRRGLRRGRTVRTLKDRELCKGPG 
REMARK    
REMARK t0080.pep                141 KLCQALAINKSFDQRDL.AQDEAVWLERGPLEPSE 
REMARK 1AISB                     56 ..CRLLKVPRTLDEIADIARVDKKEIGRSYRFIAR 
REMARK   Consensus              151 KLCKALGITMDFDQIDLFGQDEPLWLQRGPTHDEK 
REMARK    
MODEL 1  
REMARK    
REMARK Search results: 
REMARK   Profile : t0080.prf 
REMARK   Length  : 237 
REMARK   alignment method = FIT_PRF   (P) 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1aoeA               +   7.67   3.38  192. ! Resolution=1.60  192 residues MOL_ID: 1; 
REMARK pdb90:1fvpA               +   4.34   2.05  231. ! Resolution=2.70  231 residues MOL_ID: 1; 
REMARK pdb90:7timA               +   3.76   1.82  247. ! Resolution=1.90  247 residues TRIOSEPHOSPHATE ISOMERASE (E.C.5.3.1.1) COMPLEX WI 
REMARK pdb90:1aak                +   3.73   1.81  151. !  Resolution=2.40  151 residues UBIQUITIN CONJUGATING ENZYME (E.C.6.3.2.19) 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0080.pep                142 LCQALAINKSFDQRDL.AQDEAVWLERGP.L..EP..SEPAVVAAARVGV 
REMARK 1AOEA                      1 ...................................MLKPNVAIIVAALKP 
REMARK   Consensus              151 LCQALGRSKSFDQRDLFGQDEAVWLQRGLNLDFKG.YTPEAIVCGPRIGI 
REMARK    
REMARK t0080.pep                186 GHA.GEWARKPLRFYVRGSPWVSV...VDRVAEQDTQA 
REMARK 1AOEA                     16 ALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVI 
REMARK   Consensus              201 DYAQEEDIDRLWRFWIKGKRYVSAYRRTPRPPARGASA 
REMARK    
PARENT 1AISB 
F 166    L 1109 
C 167    A 1110 
M 168    F 1111 
N 169    A 1112 
I 170    L 1113 
S 171    L 1116 
S 172    D 1117 
Q 173    R 1118 
G 174    I 1119 
D 175    T 1120 
G 176    A 1121 
A 177    Q 1122 
C 178    L 1123 
V 179    K 1124 
L 180    L 1125 
L 181    P 1126 
R 182    R 1127 
A 183    H 1128 
L 184    V 1129 
E 185    E 1130 
P 186    E 1131 
L 187    E 1132 
E 188    A 1133 
G 189    A 1134 
L 190    R 1135 
E 191    L 1136 
T 192    Y 1137 
M 193    R 1138 
R 194    E 1139 
Q 195    A 1140 
L 196    V 1141 
R 197    R 1142 
S 198    K 1143 
T 199    G 1144 
L 200    L 1145 
R 201    I 1146 
K 202    R 1147 
G 203    G 1148 
T 204    R 1149 
A 205    S 1150 
S 206    I 1151 
R 207    E 1152 
V 208    S 1153 
L 209    V 1154 
K 210    M 1155 
D 211    A 1156 
R 212    A 1157 
E 213    C 1158 
L 214    V 1159 
C 215    Y 1160 
P 218    A 1161 
S 219    A 1162 
C 222    C 1163 
Q 223    R 1164 
A 224    L 1165 
L 225    L 1166 
A 226    K 1167 
I 227    V 1168 
N 228    P 1169 
K 229    R 1170 
S 230    T 1171 
F 231    L 1172 
D 232    D 1173 
Q 233    E 1174 
R 234    I 1175 
D 235    A 1176 
L 236    D 1177 
A 237    A 1179 
Q 238    R 1180 
D 239    V 1181 
E 240    D 1182 
A 241    K 1183 
V 242    K 1184 
W 243    E 1185 
L 244    I 1186 
E 245    G 1187 
R 246    R 1188 
G 247    S 1189 
P 248    Y 1190 
L 249    R 1191 
E 250    F 1192 
P 251    I 1193 
S 252    A 1194 
TER 
END 
