 
PFRMAT AL 
TARGET T0080 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_30_25%  
REMARK Alignment Method Used: 1onr_a: Quasi-Global Dynamic Programming 
REMARK Alignment Method Used: 1ses_b: Local Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  2 
PARENT 1ses_B 
S  137 S  257 
R  138 E  258 
G  139 A  259 
G  140 G  260 
R  141 S  261 
Q  142 F  262 
T  143 G  263 
P  144 K  264 
R  145 D  265 
N  146 V  266 
R  147 R  267 
G  148 G  268 
M  149 L  269 
F  150 M  270 
M  151 R  271 
K  152 V  272 
P  153 H  273 
G  154 Q  274 
T  155 F  275 
L  156 H  276 
Y  157 K  277 
V  158 V  278 
Y  159 E  279 
I  160 Q  280 
F  166 Y  281 
C  167 V  282 
M  168 L  283 
N  169 T  284 
I  170 E  285 
S  171 A  286 
S  172 S  287 
Q  173 L  288 
G  174 E  289 
D  175 A  290 
G  176 S  291 
A  177 D  292 
C  178 R  293 
V  179 A  294 
L  180 F  295 
L  181 Q  296 
R  182 E  297 
A  183 L  298 
L  184 L  299 
E  185 E  300 
P  186 N  301 
L  187 A  302 
L  190 E  303 
E  191 E  304 
T  192 I  305 
M  193 L  306 
R  194 R  307 
Q  195 L  308 
L  196 L  309 
R  197 E  310 
TER 
END 
