PFRMAT AL 
TARGET T0081 
AUTHOR 7169-6295-1599 
METHOD T0081,  its homologous sequences and their multiple alignment were threaded 
METHOD on the structural library composed of PDB rel.83 by several method we 
METHOD developed. 1rnl structure indicates good compatibility to SP| P45120 
METHOD sequence by a method and other similar structures (flavodoxin-like fold) 
METHOD showed relatively high compatibility. When we estimate the average score over 
METHOD each trial with homologous sequences using the other threader, also the 
METHOD structure takes top position. Flavodoxin-like fold is a/b type and that 
METHOD looks consistent with the results of the secondary structure prediction. In 
METHOD the inverse folding search by 1rnl structure against the sequence database 
METHOD constructed from PDB rel.83 and the target sequences, SP| P45120 sequence 
METHOD appears at the next position to the flavodoxin-like folds (1tmy, 1ntr, 3chy 
METHOD etc.). All the results indicates the possibility that this protein takes  
METHOD flavodoxin-like fold. 
MODEL 1 
PARENT 1rnl 
A 10 E 5 
R 11 P 6 
K 12 A 7 
H 13 T 8 
I 14 I 9 
A 15 L 10 
L 16 L 11 
V 17 I 12 
A 18 D 13 
H 19 D 14 
D 20 H 15 
H 21 P 16 
C 22 L 18 
K 23 R 19 
Q 24 T 20 
M 25 G 21 
L 26 V 22 
M 27 K 23 
S 28 Q 24 
W 29 L 25 
V 30 I 26 
E 31 S 27 
R 32 M 28 
H 33 A 29 
Q 34 P 30 
P 35 D 31 
L 36 I 32 
L 37 T 33 
E 38 V 34 
H 40 V 35 
V 41 G 36 
L 42 E 37 
Y 43 A 38 
A 44 S 39 
T 45 N 40 
G 46 G 41 
T 47 E 42 
T 48 Q 43 
G 49 G 44 
N 50 I 45 
L 51 E 46 
I 52 L 47 
S 53 A 48 
R 54 E 49 
A 55 S 50 
T 56 L 51 
G 57 D 52 
M 58 P 53 
N 59 D 54 
V 60 L 55 
N 61 I 56 
A 62 L 57 
M 63 L 58 
L 64 D 59 
S 65 L 60 
G 66 N 61 
P 67 M 62 
M 68 P 63 
G 69 G 64 
G 70 M 65 
D 71 N 66 
Q 72 L 68 
Q 73 E 69 
V 74 T 70 
G 75 L 71 
A 76 D 72 
L 77 K 73 
I 78 L 74 
S 79 R 75 
E 80 E 76 
G 81 K 77 
K 82 S 78 
I 83 L 79 
D 84 S 80 
V 85 G 81 
L 86 R 82 
I 87 I 83 
F 88 V 84 
F 89 V 85 
W 90 F 86 
N 94 S 87 
A 95 V 88 
V 96 S 89 
P 97 N 90 
H 98 H 91 
D 99 E 92 
P 100 E 93 
D 101 D 94 
V 102 V 95 
K 103 V 96 
A 104 T 97 
L 105 A 98 
L 106 L 99 
R 107 K 100 
L 108 R 101 
A 109 G 102 
T 110 A 103 
V 111 D 104 
W 112 G 105 
N 113 Y 106 
I 114 L 107 
P 115 L 108 
V 116 K 109 
A 117 D 110 
T 118 M 111 
N 119 E 112 
V 120 P 113 
A 121 E 114 
T 122 D 115 
A 123 L 116 
D 124 K 118 
F 125 A 119 
I 126 L 120 
I 127 H 121 
Q 128 Q 122 
S 129 A 123 
P 130 A 124 
H 131 A 125 
F 132 G 126 
N 133 E 127 
D 134 M 128 
A 135 V 129 
V 136 L 130 
D 137 S 131 
P 141 E 132 
D 142 A 133 
Y 143 L 134 
Q 144 T 135 
R 145 P 136 
Y 146 V 137 
L 147 L 138 
A 148 A 139 
D 149 A 140 
R 150 S 141 
L 151 L 142 
TER 
END 
