PFRMAT AL 
TARGET T0081 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK MGSA_ECOLI                 1 MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGN 
REMARK MGSA_HAEIN                 1 MQTTTRTLTQHKRIALVAHDSCKKNLLNWTQKHKEALKPHILYATGTTGH 
REMARK Y036_SYNY3                 4 ............HIALIAHDNKKDALVNFVQQHKSLFSRYDLIATGQTGE 
REMARK MGSA_BACSU                 2 ............KIALIAHDKKKQDMVQFTTAYRDILKNHDLYATGTTGL 
REMARK MGSA_BRUAB                 1 .......MTQRLRIALIAHDQKKDDMVAFARAHEQALSRYDIVATGTTGG 
REMARK    
REMARK MGSA_ECOLI                51 LISRA.TGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHD 
REMARK MGSA_HAEIN                51 ILERE.TGLSIQSLLSGPMGGDQQLGGLIAEKKIDMMIFFWXPMNAAPHE 
REMARK Y036_SYNY3                42 LVRNK.TGLAVDTVFSGPLGGDTQIATQIIDGTIAAVIFLIDPLYAQPHE 
REMARK MGSA_BACSU                40 KIHEA.TGLQIERFQSGPLGGDQQIGALIAANALDLVIFLRDPLTAQPHE 
REMARK MGSA_BRUAB                44 LIQDACPSLNIHRVKSGPLGGDQQIGAMIAEGTVEVLIFFIDPLSPLPHD 
REMARK    
REMARK MGSA_ECOLI               100 PDVKALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILI.PDY.QRYL 
REMARK MGSA_HAEIN               100 PDVKALMRIATVWNIPVAINQSSADFLLTSVLFEQDVEIDV.PDY.EGYL 
REMARK Y036_SYNY3                91 PDIRTLLRLCEVYNVPLAINLATAKAVIKLLGKTKTGHLIFNPVAGQGNV 
REMARK MGSA_BACSU                89 PDVSALIRLCDVYSIPLATNMGTAEILVRTL................... 
REMARK MGSA_BRUAB                94 VDVKALTRLGSVYDIPMALNRATAEKLVRAL................... 
REMARK    
REMARK MGSA_ECOLI               148 ADRLK 
REMARK MGSA_HAEIN               148 KERLA 
REMARK Y036_SYNY3               141 ERELD 
REMARK MGSA_BACSU               120 ..... 
REMARK MGSA_BRUAB               125 ..... 
REMARK    
REMARK    
REMARK Search results: 
REMARK   alignment method = GLOBAL_N 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1han                +   5.36   4.35  288. !  Resolution=1.90  288 residues MOL_ID: 1; 
REMARK pdb90:1dhy                +   4.75   4.06  278. !  Resolution=2.30  278 residues MOL_ID: 1; 
REMARK pdb90:1dpi                +   4.07   3.73  546. !  Resolution=2.80  546 residues /DNA$ POLYMERASE I (KLENOW FRAGMENT) (E.C.2.7.7.7 
REMARK pdb90:1glk                +   4.07   3.73  458. !  Resolution=0.00  458 residues GLUCOKINASE (ATP:D-HEXOSE 6-PHOSPHOTRANSFERASE) 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0081.pep                  1 .......MELTTRTLPARKHIALVAHDHCKQMLMSWVER.HQPLLEQHVL 
REMARK 1HAN                       1 SIRSLGYMGFAVSDVAAW.R.SFLT..Q.KLGLMEAGTT.DNG....DLF 
REMARK   Consensus                1 .......MQLTTRTMTQRLRIALIAHDKKKEDMVQFTRAHREILKRYDLY 
REMARK    
REMARK t0081.pep                 43 YATGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDP 
REMARK 1HAN                      41 RIDSRAWRIAVQQGEVDDLAFAGYEVADAAGLAQMADKLKQAGIAVTTGD 
REMARK   Consensus               51 ATGTTGLMIHDACPGLQIHRFKSGPLGGDQQIGALIAEGTLDLLIFFRDP 
REMARK    
REMARK t0081.pep                 93 LNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPD 
REMARK 1HAN                      91 .ASLARRRGVTGLITFADPFGLPLEIYYGASEVFEKPFLPGAAVSGFLTG 
REMARK   Consensus              101 LTPQPHEPDVKALIRLCDVYDIPLAIDMGTAEFLVRTLHFDKTVHLIFDP 
REMARK    
REMARK t0081.pep                143 YQRYLADRLK. 
REMARK 1HAN                     140 EQGLGHFVRCV 
REMARK   Consensus              151 DYGQGYLERRL 
REMARK    
MODEL 1  
PARENT 1HAN 
M   1    M   9 
E   2    G  10 
L   3    F  11 
T   4    A  12 
T   5    V  13 
R   6    S  14 
T   7    D  15 
L   8    V  16 
P   9    A  17 
A  10    A  18 
R  11    W  19 
H  13    R  20 
A  15    S  21 
L  16    F  22 
V  17    L  23 
A  18    T  24 
H  21    Q  25 
K  23    K  26 
Q  24    L  27 
M  25    G  28 
L  26    L  29 
M  27    M  30 
S  28    E  31 
W  29    A  32 
V  30    G  33 
E  31    T  34 
R  32    T  35 
H  33    D  36 
Q  34    N  37 
P  35    G  38 
H  40    D  39 
V  41    L  40 
L  42    F  41 
Y  43    R  42 
A  44    I  43 
T  45    D  44 
G  46    S  45 
T  47    R  46 
T  48    A  47 
G  49    W  48 
N  50    R  49 
L  51    I  50 
I  52    A  51 
S  53    V  52 
R  54    Q  53 
A  55    Q  54 
T  56    G  55 
G  57    E  56 
M  58    V  57 
N  59    D  58 
V  60    D  59 
N  61    L  60 
A  62    A  61 
M  63    F  62 
L  64    A  63 
S  65    G  64 
G  66    Y  65 
P  67    E  66 
M  68    V  67 
G  69    A  68 
G  70    D  69 
D  71    A  70 
Q  72    A  71 
Q  73    G  72 
V  74    L  73 
G  75    A  74 
A  76    Q  75 
L  77    M  76 
I  78    A  77 
S  79    D  78 
E  80    K  79 
G  81    L  80 
K  82    K  81 
I  83    Q  82 
D  84    A  83 
V  85    G  84 
L  86    I  85 
I  87    A  86 
F  88    V  87 
F  89    T  88 
W  90    T  89 
D  91    G  90 
P  92    D  91 
N  94    A  92 
A  95    S  93 
V  96    L  94 
P  97    A  95 
H  98    R  96 
D  99    R  97 
P 100    R  98 
D 101    G  99 
V 102    V 100 
K 103    T 101 
A 104    G 102 
L 105    L 103 
L 106    I 104 
R 107    T 105 
L 108    F 106 
A 109    A 107 
T 110    D 108 
V 111    P 109 
W 112    F 110 
N 113    G 111 
I 114    L 112 
P 115    P 113 
V 116    L 114 
A 117    E 115 
T 118    I 116 
N 119    Y 117 
V 120    Y 118 
A 121    G 119 
T 122    A 120 
A 123    S 121 
D 124    E 122 
F 125    V 123 
I 126    F 124 
I 127    E 125 
Q 128    K 126 
S 129    P 127 
P 130    F 128 
H 131    L 129 
F 132    P 130 
N 133    G 131 
D 134    A 132 
A 135    A 133 
V 136    V 134 
D 137    S 135 
I 138    G 136 
L 139    F 137 
I 140    L 138 
P 141    T 139 
D 142    G 140 
Y 143    E 141 
Q 144    Q 142 
R 145    G 143 
Y 146    L 144 
L 147    G 145 
A 148    H 146 
D 149    F 147 
R 150    V 148 
L 151    R 149 
K 152    C 150 
TER 
END 
