 
PFRMAT AL 
TARGET T0081 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: BS_90_25%  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 2emd 
D   91 E    6 
P   92 L    7 
L   93 F    8 
N   94 T    9 
A   95 G   10 
V   96 V   11 
P   97 V   12 
H   98 P   13 
D   99 I   14 
P  100 L   15 
D  101 V   16 
V  102 E   17 
K  103 L   18 
A  104 D   19 
L  105 G   20 
L  106 D   21 
R  107 V   22 
L  108 N   23 
A  109 G   24 
T  110 H   25 
V  111 K   26 
W  112 F   27 
N  113 S   28 
I  114 V   29 
P  115 S   30 
V  116 G   31 
A  117 E   32 
T  118 G   33 
N  119 E   34 
V  120 G   35 
A  121 D   36 
T  122 A   37 
A  123 T   38 
D  124 Y   39 
F  125 G   40 
I  126 K   41 
I  127 L   42 
Q  128 T   43 
S  129 L   44 
P  130 K   45 
H  131 F   46 
F  132 I   47 
N  133 C   48 
D  134 T   49 
A  135 T   50 
V  136 G   51 
D  137 K   52 
I  138 L   53 
L  139 P   54 
I  140 V   55 
P  141 P   56 
D  142 W   57 
Y  143 P   58 
Q  144 T   59 
R  145 L   60 
Y  146 V   61 
L  147 T   62 
A  148 T   63 
D  149 L   64 
R  150 V   68 
L  151 Q   69 
K  152 C   70 
TER 
END 
