PFRMAT AL 
TARGET T0082 
AUTHOR 5827-4749-3439 
METHOD Threading alignment for T0082 
METHOD 
METHOD Note: this alignment was obtained automatically, and has not been 
METHOD hand-edited. 
METHOD 
METHOD This alignment was created by aligning the target sequence to a 
METHOD library of 3D-1D type threading models.  Matching and gap scores 
METHOD were optimized for discriminating remote homolog sequence-structure 
METHOD alignments from alignments on incorrect folds. 
METHOD 
METHOD Parent structure 1bol scored slightly lower than three other structures. 
METHOD This alignment was obtained by constraining the active site structure 
METHOD positions labelled in the PDB file (H 46, E 105, H 109) to align the  
METHOD proper residue type, and then automatically maximizing the  
METHOD sequence-structure threading score for the remaining residues. 
METHOD 
MODEL 2 
PARENT 1bol 
D    2    S    13 
S    3    A    14 
F    4    N    15 
W    5    C    19 
F    6    C    20 
V    7    S    21 
Q    8    P    22 
Q    9    E    23 
W    10    Y    24 
P    11    G    25 
P    12    L    26 
A    13    V    27 
V    14    V    28 
C    15    L    29 
S    16    N    30 
F    17    M    31 
Q    18    Q    32 
K    19    W    33 
S    20    A    34 
G    21    P    35 
S    22    G    36 
C    23    Y    37 
P    24    G    38 
G    25    P    39 
S    26    D    40 
G    27    N    41 
T    30    A    42 
F    31    F    43 
T    32    T    44 
I    33    L    45 
H    34    H    46 
G    35    G    47 
L    36    L    48 
W    37    W    49 
P    38    P    50 
Q    39    D    51 
Q    40    K    52 
S    41    C    53 
G    42    S    54 
T    43    G    55 
S    44    A    56 
T    46    Y    57 
N    47    A    58 
C    48    P    59 
P    49    S    60 
G    50    G    61 
S    51    G    62 
P    52    C    63 
F    53    D    64 
D    54    S    65 
I    55    I    72 
T    56    A    73 
K    57    S    74 
I    58    V    75 
S    59    S    81 
H    60    S    82 
L    61    L    83 
Q    62    Y    84 
S    63    N    85 
Q    64    S    86 
L    65    M    87 
N    66    L    88 
T    67    T    89 
L    68    Y    90 
W    69    W    91 
P    70    P    92 
N    71    S    93 
V    72    N    94 
R    74    Q    95 
A    75    G    96 
N    76    N    97 
N    77    N    98 
Q    78    N    99 
Q    79    V    100 
F    80    F    101 
W    81    W    102 
S    82    S    103 
H    83    H    104 
E    84    E    105 
W    85    W    106 
T    86    S    107 
K    87    K    108 
H    88    H    109 
G    89    G    110 
T    90    T    111 
C    91    C    112 
S    92    V    113 
E    93    S    114 
S    94    T    115 
T    95    Y    116 
F    96    D    117 
N    97    P    118 
Q    98    D    119 
A    99    E    128 
A    100    D    129 
Y    101    I    130 
F    102    V    131 
K    103    D    132 
L    104    Y    133 
A    105    F    134 
V    106    Q    135 
D    107    K    136 
M    108    A    137 
R    109    M    138 
N    110    D    139 
N    111    L    140 
Y    112    R    141 
D    113    S    142 
I    114    Q    143 
I    115    Y    144 
G    116    N    145 
A    117    V    146 
L    118    Y    147 
R    119    K    148 
P    120    A    149 
H    121    F    150 
A    122    S    151 
A    123    S    152 
G    124    I    155 
P    125    T    156 
N    126    P    157 
G    127    G    158 
R    128    G    159 
T    129    T    160 
K    130    Y    161 
S    131    T    162 
R    132    A    163 
Q    133    T    164 
A    134    E    165 
I    135    M    166 
K    136    Q    167 
G    137    S    168 
F    138    A    169 
L    139    I    170 
K    140    E    171 
A    141    S    172 
K    142    Y    173 
F    143    F    174 
G    144    G    175 
P    147    A    176 
G    148    K    177 
L    149    A    178 
R    150    K    179 
C    151    I    180 
R    152    D    181 
T    153    C    182 
D    154    S    183 
P    155    S    184 
T    157    G    185 
K    158    T    186 
V    159    L    187 
S    160    S    188 
Y    161    D    189 
L    162    V    190 
V    163    A    191 
Q    164    L    192 
V    165    Y    193 
V    166    F    194 
A    167    Y    195 
C    168    V    196 
F    169    R    197 
A    170    G    198 
Q    171    R    199 
D    172    D    200 
G    173    T    201 
S    174    Y    202 
T    175    V    203 
L    176    I    204 
I    177    T    205 
D    178    D    206 
C    179    A    207 
T    180    C    213 
R    181    S    214 
D    182    G    215 
T    183    D    216 
C    184    V    217 
G    185    E    218 
A    186    Y    219 
N    187    P    220 
F    188    T    221 
I    189    K    222 
TER 
END 
