 
PFRMAT AL 
TARGET T0085 
AUTHOR 9808-8259-1323 
METHOD Searched 1962 pdb sequences with max. 90% identity using a 
METHOD sequence profile based on alignment below and PAM250.  
REMARK 
REMARK Alignment used for sequence profile: 
REMARK    
REMARK C554_NITEU               125 DHRKSGQAFEKSGKKTPRKDLAKKGQDFHFEERCSACHLNYEGSPWKGAK 
REMARK CYC_ASPNG                  1 ..GKDA.SFA.PGDSA.......KGAKL.FQTRCAQCHTVEAGGPHKVGP 
REMARK CYC_EMENI                  1 .MAKGGDSYS.PGDST.......KGAKL.FETRCKQCHTVENGGGHKVGP 
REMARK CYC_THELA                  1 ..AKGG.SFE.PG......D.ASKGANL.FKTRCAQCHSVEQGGANKIGP 
REMARK CYC_BOEPE                  1 .GVPAGDV.EK.GKKI.............FVQRCAQCHTVEAGGKHKVGP 
REMARK CYC_HAEIR                  1 .GVPAGDV.EK.GKKI.............FVQRCAQCHTVEAGGKHKVGP 
REMARK    
REMARK C554_NITEU               175 APYTPFTPEVDAKYTFKFDEMVKEVKAMHEHYKLEGVFEGEPKF....KF 
REMARK CYC_ASPNG                 39 NLHGLFGRKTGQSEGYAYTDANKQAGVTWDENTLFSYLENPKKFIPGTKM 
REMARK CYC_EMENI                 41 NLHGLFGRKTGQAGGYAYTDANKQADVTWDENSLFKYLENPKKYIPGTKM 
REMARK CYC_THELA                 39 NLHGLFGRKTGSVEGYSYTDANKQAGITWNEDTLFEYLENPKKFIPGTKM 
REMARK CYC_BOEPE                 35 NLHGLFGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKM 
REMARK CYC_HAEIR                 35 NLHGLFGRKTGQAAGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKM 
REMARK    
REMARK C554_NITEU               221 HDEFQASAKPAKKGK 
REMARK CYC_ASPNG                 89 ..AFGG....LKKGK 
REMARK CYC_EMENI                 91 ..AFGG....LKKTK 
REMARK CYC_THELA                 89 ..AFGG....LKKNK 
REMARK CYC_BOEPE                 85 ..IFAGLKKPNERG. 
REMARK CYC_HAEIR                 85 ..IFAGLKKPNERG. 
REMARK    
REMARK File: t0085_ct.local 
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1hrc                +  41.49  26.88  105. !  Resolution=1.90  105 residues CYTOCHROME C 
REMARK pdb90:5cytR               +  40.31  26.20  104. ! Resolution=1.50  104 residues CYTOCHROME $C (REDUCED) 
REMARK pdb90:1ytc                +  40.18  26.13  112. !  Resolution=1.80  112 residues MOL_ID: 1; 
REMARK pdb90:1ccr                +  39.11  25.51  112. !  Resolution=1.50  112 residues CYTOCHROME $C 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0085.pep                101 DHRKSGQAFEK..SGKKTPRKDLAKKGQDFHFEERCSACHLNYEGSPWKG 
REMARK 1HRC                       2 ..............GD.......VEKGKKI.FVQKCAQCHTVEKGGKHKT 
REMARK 5CYTR                      2 ..............GD.......VAKGKK.TFVQKCAQCHTVENGGKHKV 
REMARK 1YTC                       2 ...KESTGFK...PGS.......AKKGATL.FKTRCQQCHTIEEGGPNKV 
REMARK 1CCR                       4 ........FSEAPPGN.......PKAGEKI.FKTKCAQCHTVDKGAGHKQ 
REMARK   Consensus                1 DHAKGGEAFEK..PGKKTPRKDLAKKGQDFHFQERCAQCHTVEEGGPHKV 
REMARK    
REMARK t0085.pep                149 AKAPYTPFTPEVDAKYTFKFDEMVKEVKAMHEHYKLEGVFEGEPKF.... 
REMARK 1HRC                      30 GPNLHGLFGRKTGQAPGFTYTDANKNKGITWKEETLMEYLENPKKYIPGT 
REMARK 5CYTR                     30 GPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGT 
REMARK 1YTC                      38 GPNLHGIFGRHSGQVKGYSYTDAIINKNVKWDEDSMSEYLTNPKKYIPGT 
REMARK 1CCR                      38 GPNLNGLFGRQSGTTPGYSYSTADKNMAVIWEENTLYDYLLNPKKYIPGT 
REMARK   Consensus               51 GPDLHGLFGRKTGQTEGYTYTDMNKQVGVTWDEDTLFDYLEDPKKFIPGT 
REMARK    
REMARK t0085.pep                195 KFHDEFQASAKPAKKGK 
REMARK 1HRC                      80 KM..IFAGIKKKTERED 
REMARK 5CYTR                     80 KM..IFAGIKKKGER.. 
REMARK 1YTC                      88 KM..AFAGLKKEKDRND 
REMARK 1CCR                      88 KM..VFPGLKKPQERAD 
REMARK   Consensus              101 KMHDAFGGLKKPLKKGK 
REMARK    
REMARK   Consensus              151  
REMARK    
REMARK File: t0085_nt.fitprf 
REMARK Search results: 
REMARK           Name               ZScore Score Length   Documentation .. 
REMARK pdb90:1iltA               +   5.42   4.85  143. ! Resolution=2.00  143 residues INTERLEUKIN-1 RECEPTOR ANTAGONIST (IL-1RA) (ALPHA  
REMARK pdb90:1wad                +   5.26   4.73  111. !  Resolution=1.80  111 residues MOL_ID: 1; 
REMARK pdb90:2cy3                +   4.81   4.40  118. !  Resolution=1.70  118 residues CYTOCHROME C=3= 
REMARK pdb90:1ksiA               +   4.62   4.26  381. ! Resolution=2.20  381 residues MOL_ID: 1; 
REMARK 
REMARK Alignment: 
REMARK    
REMARK t0085.pep                  1 ADAPFEGRKKCSSCHKAQAQSWKDTAHAKAMESLKPNVKKEAKQKAKLDP 
REMARK 1WAD                      33 .........KCDDCHHDPGDKQYAGCTTDGCHNILDKADKSVNSWYKVVH 
REMARK    
REMARK t0085.pep                 51 AKDYTQDKDCVGCHVDGFGQKGGYTIESPKPMLTGVGCESCHGPGRNFRG 
REMARK 1WAD                      74 DAKGGAKPTCISCHKDKAGDDKEL.....KKKLTGCKGSACH........ 
REMARK    
MODEL 1  
PARENT 1HRC 
A 122    V   3 
K 123    E   4 
K 124    K   5 
G 125    G   6 
Q 126    K   7 
D 127    K   8 
F 128    I   9 
F 130    F  10 
E 131    V  11 
E 132    Q  12 
R 133    K  13 
C 134    C  14 
S 135    A  15 
A 136    Q  16 
C 137    C  17 
H 138    H  18 
L 139    T  19 
N 140    V  20 
Y 141    E  21 
E 142    K  22 
G 143    G  23 
S 144    G  24 
P 145    K  25 
W 146    H  26 
K 147    K  27 
G 148    T  28 
A 149    G  29 
K 150    P  30 
A 151    N  31 
P 152    L  32 
Y 153    H  33 
T 154    G  34 
P 155    L  35 
F 156    F  36 
T 157    G  37 
P 158    R  38 
E 159    K  39 
V 160    T  40 
D 161    G  41 
A 162    Q  42 
K 163    A  43 
Y 164    P  44 
T 165    G  45 
F 166    F  46 
K 167    T  47 
F 168    Y  48 
D 169    T  49 
E 170    D  50 
M 171    A  51 
V 172    N  52 
K 173    K  53 
E 174    N  54 
V 175    K  55 
K 176    G  56 
A 177    I  57 
M 178    T  58 
H 179    W  59 
E 180    K  60 
H 181    E  61 
Y 182    E  62 
K 183    T  63 
L 184    L  64 
E 185    M  65 
G 186    E  66 
V 187    Y  67 
F 188    L  68 
E 189    E  69 
G 190    N  70 
E 191    P  71 
P 192    K  72 
K 193    K  73 
F 194    Y  74 
K 195    K  79 
F 196    M  80 
E 199    I  81 
F 200    F  82 
Q 201    A  83 
A 202    G  84 
S 203    I  85 
A 204    K  86 
K 205    K  87 
P 206    K  88 
A 207    T  89 
K 208    E  90 
K 209    R  91 
G 210    E  92 
K 211    D  93 
TER 
END 
