PFRMAT AL 
TARGET T0085 
AUTHOR 3928-6005-7158 
METHOD The threading algorithm used in predictions is based on a self-consistent  
METHOD field theory [1-3]. The energy parameters are taken from [4].  
METHOD We compute a free energy of a target sequence for PDB folds  
METHOD and choose 5 folds with the lowest energy. 
METHOD 
METHOD REFERENCES 
METHOD 1. Finkelstein, A.V. & Reva, B.A. (1991). A search for the most stable 
METHOD    folds of protein chains. Nature 351, 497-499. 
METHOD 2. Finkelstein, A.V. & Reva, B.A. (1996). Search for the most stable 
METHOD    folds of protein chains. I. Application of a self-consistent 
METHOD    molecular field theory to a problem of protein three-dimensional 
METHOD    structure prediction. Protein Eng. 9, 387-397. 
METHOD 3. Reva, B.A. & Finkelstein, A.V. (1996). Search for the most stable 
METHOD    folds of protein chains. II. Computation of stable architectures 
METHOD    of (-proteins using a self-consistent molecular field theory. 
METHOD    Protein Eng. 9, 399-411. 
METHOD 4. Reva B.A, Finkelstein, A.V., Sanner M.F, Olson A.J. (1997) 
METHOD    Residue-residue mean-force potentials for protein structure recognition.  
METHOD    Protein Eng. 10, pp.865-876. 
MODEL  1 
PARENT 1frv_B 
A   1    A 134     
D   2    A 135     
A   3    R 136     
P   4    L 137     
F   5    A 138     
E   6    N 139     
G   7    D 140     
R   8    L 141     
K   9    S 142     
K  10    P 143     
C  11    R 144     
S  12    K 145     
S  13    T 146     
C  14    T 147     
H  15    T 148     
K  16    E 149     
A  17    S 150     
Q  18    L 151     
A  19    K 152     
Q  20    A 153     
S  21    V 154     
W  22    Q 155     
K  23    A 156     
D  24    K 157     
T  25    V 158     
A  26    K 159     
H  27    A 160     
A  28    L 161     
K  29    V 162     
A  30    E 163     
M  31    S 164     
E  32    G 165     
S  33    Q 166     
L  34    L 167     
K  35    G 168     
P  36    I 169     
N  37    F 170     
V  38    T 171     
K  39    N 172     
K  40    A 173     
E  41    Y 174     
A  42    F 175     
K  43    L 176     
Q  44    G 177     
K  45    G 178     
A  46    H 179     
K  47    P 180     
L  48    A 181     
Y  54    W 271     
T  55    A 272     
Q  56    G 273     
D  57    I 274     
K  58    G 275     
D  59    K 276     
C  60    T 277     
V  61    S 278     
G  62    N 279     
C  63    F 280     
H  64    L 281     
V  65    T 282     
D  66    C 283     
G  67    G 284     
F  68    E 285     
G  69    F 286     
Q  70    P 287     
K  71    T 288     
G  72    D 289     
G  73    E 290     
Y  74    Y 291     
T  75    D 292     
I  76    L 293     
E  77    N 294     
S  78    S 295     
P  79    R 296     
K  80    Y 297     
P  81    T 298     
M  82    P 299     
L  83    Q 300     
T  84    G 301     
G  85    V 302     
V  86    I 303     
G  87    W 304     
C  88    G 305     
E  89    N 306     
S  90    D 307     
C  91    L 308     
H  92    S 309     
G  93    K 310     
P  94    V 311     
G  95    D 312     
R  96    D 313     
N  97    F 314     
F  98    N 315     
R  99    P 316     
G 100    D 317     
D 101    L 318     
H 102    I 319     
Q 107    H 334     
A 108    H 335     
F 109    P 336     
E 110    Y 337     
K 111    K 338     
S 112    G 339     
G 113    V 340     
L 121    Y 362     
Q 126    E 365     
D 127    A 366     
F 128    F 367     
H 129    E 368     
F 130    V 369     
E 131    G 370     
E 132    P 371     
R 133    L 372     
C 134    A 373     
S 135    S 374     
A 136    V 375     
C 137    L 376     
H 138    V 377     
L 139    A 378     
N 140    Y 379     
Y 141    A 380     
G 148    V 393     
A 149    L 394     
K 150    K 395     
A 151    T 396     
P 152    L 397     
Y 153    G 398     
T 154    V 399     
P 155    G 400     
F 156    P 401     
T 157    E 402     
P 158    A 403     
E 159    L 404     
V 160    F 405     
D 161    S 406     
A 162    T 407     
K 163    L 408     
Y 164    G 409     
T 165    R 410     
F 166    T 411     
K 167    A 412     
F 168    A 413     
D 169    R 414     
E 170    G 415     
M 171    I 416     
V 172    Q 417     
K 173    C 418     
E 174    L 419     
V 175    T 420     
K 176    A 421     
A 177    A 422     
M 178    Q 423     
H 179    E 424     
E 180    V 425     
H 181    E 426     
Y 182    V 427     
K 183    W 428     
L 184    L 429     
E 185    D 430     
G 186    K 431     
V 187    L 432     
F 188    E 433     
E 189    A 434     
G 190    N 435     
E 191    V 436     
P 192    K 437     
K 193    A 438     
F 194    G 439     
K 195    K 440     
F 196    D 441     
H 197    D 442     
D 198    L 443     
E 199    Y 444     
F 200    T 445     
Q 201    D 446     
A 202    W 447     
S 203    Q 448     
A 204    Y 449     
K 205    P 450     
P 206    T 451     
A 207    E 452     
K 211    G 474     
TER 
END 
