

PFRMAT AL
TARGET T0086
AUTHOR 4216-9015-4014
REMARK Predictor remarks
METHOD CASP4 submission
METHOD 
METHOD Work by Kelley LA, MacCallum RM & Sternberg MJE
METHOD Biomolecular Modelling Laboratory
METHOD Imperial Cancer Research Fund
METHOD 44 Lincoln's Inn Fields
METHOD London WC2A 3PX, England 
METHOD Tel +44-(0)20-7269-3565 / 3242
METHOD FAX +44-(0)20-7269-3534
METHOD
METHOD Using the results from the 3D-PSSM server:
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD 
METHOD The rank 2 hit to a Ferredoxin was chosen on the basis of 
METHOD the enzymatic tendency of this fold, its broad functionality, 
METHOD and the ability to match core secondary structure elements 
METHOD between query and template.
METHOD 
METHOD The alignment has been manually adjusted to preserve 
METHOD the hydrophobic core and the continuity of the secondary 
METHOD structure elements.
METHOD 
MODEL 1
PARENT 1ha1
A    4 E 8
L    5 P 9
T    6 E 10
Q    7 Q 11
L    8 L 12
R    9 R 13
A   10 K 14
L   11 L 15
R   12 F 16
Y   13 I 17
C   14 G 18
K   15 G 19
E   16 L 20
I   17 S 21
P   18 F 22
A   19 E 23
L   20 T 24
D   21 T 25
E   31 D 26
D   32 E 27
S   33 S 28
M   34 L 29
T   35 R 30
K   36 S 31
R   37 H 32
F   38 F 33
E   39 E 34
Q   40 Q 35
Q   41 W 36
G   42 G 37
K   43 T 38
T   44 L 39
V   45 T 40
S   46 D 41
V   47 C 42
T   48 V 43
M   49 V 44
I   50 M 45
R   51 R 46
E   52 D 47
G   53 P 48
F   54 N 49
V   55 T 50
E   56 K 51
W   87 R 52
L   88 S 53
A   89 R 54
G   90 G 55
R   91 F 56
T   92 G 57
V   93 F 58
V   94 V 59
P   95 T 60
V   96 Y 61
S   97 A 62
T   98 T 63
L   99 V 64
S  100 E 65
G  101 E 66
P  102 V 67
E  103 D 68
L  104 A 69
A  105 A 70
L  106 M 71
Q  107 N 72
K  108 A 73
L  109 R 74
G  110 P 75
K  111 H 76
T  112 K 77
P  113 V 78
L  114 D 79
G  115 G 80
R  116 R 81
Y  117 V 82
L  118 V 83
F  119 E 84
T  120 P 85
S  121 K 86
S  122 R 87
T  123 A 88
L  124 V 89
T  125 S 90
R  126 R 91
D  127 E 92
TER
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