
PFRMAT AL
TARGET T0086
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1wtu_A
P    3 M 1
A    4 N 2
L    5 K 3
T    6 T 4
Q    7 E 5
L    8 L 6
A   10 I 7
L   11 K 8
R   12 A 9
Y   13 I 10
C   14 A 11
K   15 Q 12
E   16 D 13
I   17 T 14
P   18 E 15
A   19 L 16
L   20 T 17
D   21 Q 18
P   22 V 19
Q   23 S 20
L   24 V 21
L   25 S 22
D   26 K 23
W   27 M 24
L   28 L 25
L   29 A 26
L   30 F 28
E   31 E 29
D   32 K 30
S   33 I 31
M   34 T 32
T   35 T 33
K   36 E 34
R   37 T 35
F   38 V 36
E   39 A 37
Q   40 K 38
Q   41 G 39
G   42 D 40
K   43 K 41
T   44 F 47
V   45 L 48
S   46 N 49
V   47 I 50
T   48 K 51
M   49 P 52
I   50 V 53
R   51 R 58
E   52 K 59
G   53 G 60
F   54 F 61
V   55 N 62
E   56 P 63
Q   57 Q 64
N   58 Q 66
E   59 E 67
I   60 A 68
P   61 L 69
E   62 E 70
E   63 I 71
L   64 A 72
P   65 P 73
L   66 S 74
L   67 V 75
P   68 P 81
K   69 G 82
E   70 E 83
S   71 S 84
R   72 L 85
Y   73 K 86
W   74 K 87
L   75 A 88
R   76 A 89
E   77 E 90
I   78 L 92
L   79 K 93
L   80 Y 94
C   81 E 95
A   82 D 96
D   83 F 97
G   84 A 98
E   85 K 99
TER
END

