
PFRMAT AL
TARGET T0086
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1jhg_A
L  29    L  61
L  30    L  62
E  31    R  63
D  32    G  64
S  33    E  65
M  34    M  66
T  35    S  67
K  36    Q  68
R  37    R  69
F  38    E  70
E  39    L  71
Q  40    K  72
Q  41    N  73
G  42    E  74
K  43    L  75
T  44    G  76
V  45    A  77
S  46    G  78
V  47    I  79
T  48    A  80
M  49    T  81
I  50    I  82
R  51    T  83
E  52    R  84
G  53    G  85
P  61    S  86
E  62    N  87
E  63    S  88
L  64    L  89
P  65    K  90
L  66    A  91
L  67    A  92
P  68    P  93
K  69    V  94
E  70    E  95
S  71    L  96
R  72    R  97
Y  73    Q  98
W  74    W  99
L  75    L 100
R  76    E 101
E  77    E 102
I  78    V 103
L  79    L 104
L  80    L 105
C  81    K 106
A  82    S 107
D  83    D 108
TER
END

