
PFRMAT AL                                                                        
TARGET T0086                                                                     
REMARK =========================================================================
AUTHOR 6923-1755-6564                                                           
REMARK Ralf Zimmer, GMD-SCAI,                                                   
REMARK Theo Mevissen, GMD-SCAI,                                                 
REMARK Ingolf Sommer, GMD-SCAI,                                                 
REMARK Thomas Lengauer, GMD-SCAI,                                               
REMARK German National Research Center for Information Technology               
REMARK Institute for Algorithms and Scientific Computing                        
REMARK =========================================================================
METHOD A reduced candidate list is produced via ToPLign [1]                     
METHOD sequence/profile alignments, 123D [2] and RDP [3].                       
METHOD The top scoring candidates from this list and the                        
METHOD corresponding refined alignments have been produced                      
METHOD with RDP [3] using newly derived modifications of                        
METHOD contact capacity [2] and pair interaction potentials.                    
METHOD References:                                                              
METHOD [1] Heinz Mevissen and Ralf Thiele and Ralf Zimmer and Thomas Lengauer:  
METHOD     "Analysis of Protein Alignments -- The software environment ToPLign",
METHOD     GMD, 1994-98.                                                        
METHOD [2] Nick Alexandrov and Ruth Nussinov and Ralf Zimmer:                   
METHOD     "Fast Protein Fold Recognition via Sequence to Structure Alignment   
METHOD     and Contact Capacity Potentials",                                    
METHOD     Pacific Symposium on Biocomputing'96, World Scientific Publ. Co.,    
METHOD     1996, 53--72.                                                        
METHOD [3] Ralf Thiele and Ralf Zimmer and Thomas Lengauer:                     
METHOD     "Recursive Dynamic Programming for Adaptive Sequence                 
METHOD     and Structure Alignment",                                            
METHOD     ISMB'95, C. Rawlings et al. (Eds.), AAAI Press, 384--392.            
REMARK =========================================================================
MODEL  1                                                                         
PARENT 1A0P                                                                      
H   2    D   112                                                                 
P   3    L   113                                                                 
A   4    S   114                                                                 
L   5    E   115                                                                 
T   6    A   116                                                                 
Q   7    Q   117                                                                 
L   8    V   118                                                                 
R   9    E   119                                                                 
A  10    R   120                                                                 
L  11    L   121                                                                 
R  12    L   122                                                                 
Y  13    Q   123                                                                 
C  14    A   124                                                                 
K  15    P   125                                                                 
E  16    L   126                                                                 
I  17    I   127                                                                 
P  18    D   128                                                                 
A  19    Q   129                                                                 
L  20    P   130                                                                 
D  21    L   131                                                                 
P  22    E   132                                                                 
Q  23    L   133                                                                 
L  24    R   134                                                                 
L  25    D   135                                                                 
D  26    K   136                                                                 
W  27    A   137                                                                 
L  28    M   138                                                                 
L  29    L   139                                                                 
V  45    M   157                                                                 
S  46    S   158                                                                 
V  47    D   159                                                                 
T  48    I   160                                                                 
M  49    S   161                                                                 
I  50    L   162                                                                 
R  51    R   163                                                                 
E  52    Q   164                                                                 
G  53    G   165                                                                 
F  54    V   166                                                                 
V  55    V   167                                                                 
E  56    R   168                                                                 
Q  57    V   169                                                                 
N  58    I   170                                                                 
E  59    G   171                                                                 
I  60    K   172                                                                 
P  61    G   173                                                                 
E  62    N   174                                                                 
E  63    K   175                                                                 
L  64    E   176                                                                 
P  65    V   179                                                                 
L  66    P   180                                                                 
L  67    L   181                                                                 
P  68    G   182                                                                 
K  69    E   183                                                                 
E  70    E   184                                                                 
S  71    A   185                                                                 
R  72    V   186                                                                 
Y  73    Y   187                                                                 
W  74    W   188                                                                 
L  75    L   189                                                                 
R  76    E   190                                                                 
E  77    T   191                                                                 
I  78    Y   192                                                                 
L  79    L   193                                                                 
A  82    E   194                                                                 
D  83    H   195                                                                 
G  84    G   196                                                                 
E  85    R   197                                                                 
P  86    P   198                                                                 
W  87    W   199                                                                 
L  88    L   200                                                                 
A  89    L   201                                                                 
G  90    N   202                                                                 
R  91    G   203                                                                 
T  92    V   204                                                                 
V  93    S   205                                                                 
V  94    I   206                                                                 
P  95    D   207                                                                 
V  96    V   208                                                                 
S  97    L   209                                                                 
T  98    F   210                                                                 
L  99    P   211                                                                 
S 100    S   212                                                                 
G 101    T   219                                                                 
P 102    R   220                                                                 
E 103    Q   221                                                                 
L 104    T   222                                                                 
A 105    F   223                                                                 
L 106    W   224                                                                 
Q 107    H   225                                                                 
K 108    R   226                                                                 
L 109    I   227                                                                 
G 110    V   232                                                                 
K 111    L   233                                                                 
T 112    A   234                                                                 
P 113    G   235                                                                 
L 114    I   236                                                                 
G 115    D   237                                                                 
R 116    S   238                                                                 
Y 117    E   239                                                                 
L 118    K   240                                                                 
F 119    L   241                                                                 
T 120    S   242                                                                 
S 121    P   243                                                                 
S 122    H   244                                                                 
T 123    V   245                                                                 
L 124    L   246                                                                 
T 125    R   247                                                                 
R 126    H   248                                                                 
D 127    A   249                                                                 
F 128    F   250                                                                 
I 129    A   251                                                                 
E 130    T   252                                                                 
I 131    H   253                                                                 
G 132    N   256                                                                 
R 133    H   257                                                                 
D 134    G   258                                                                 
A 135    A   259                                                                 
G 136    D   260                                                                 
L 137    L   261                                                                 
W 138    R   262                                                                 
G 139    V   263                                                                 
R 140    V   264                                                                 
R 141    Q   265                                                                 
S 142    M   266                                                                 
R 143    L   267                                                                 
L 144    L   268                                                                 
S 147    S   271                                                                 
G 148    S   274                                                                 
K 149    T   275                                                                 
P 150    T   276                                                                 
L 151    Q   277                                                                 
L 152    I   278                                                                 
L 153    Y   279                                                                 
T 154    T   280                                                                 
E 155    H   281                                                                 
L 156    V   282                                                                 
F 157    A   283                                                                 
L 158    T   284                                                                 
P 159    E   285                                                                 
A 160    R   286                                                                 
S 161    L   287                                                                 
P 162    R   288                                                                 
L 163    Q   289                                                                 
Y 164    L   290                                                                 
TER                                                                              
END                                                                              



