
PFRMAT AL
TARGET T0087
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=6.77 
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: lacI
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1uxd
A 165     M     1 
V 166     K     2 
A 167     L     3 
E 168     D     4 
D 169     E     5 
L 170     I     6 
A 171     A     7 
K 172     R     8 
I 173     L     9 
A 174     A    10 
G 175     G    11 
V 176     V    12 
D 177     S    13 
S 194     R    14 
K 195     T    15 
T 196     T    16 
A 197     A    17 
A 198     S    18 
Q 199     Y    19 
L 200     V    20 
V 201     I    21 
D 202     N    22 
I 203     G    23 
D 204     K    24 
A 205     A    25 
K 206     K    26 
T 207     Q    27 
F 208     Y    28 
E 209     R    29 
L 210     V    30 
N 211     S    31 
G 269     D    32 
N 270     K    33 
N 271     T    34 
T 272     V    35 
D 273     E    36 
K 274     K    37 
V 275     V    38 
E 276     M    39 
A 277     A    40 
A 278     V    41 
F 279     V    42 
N 280     R    43 
F 281     E    44 
T 282     H    45 
L 283     N    46 
K 284     Y    47 
N 285     H    48 
A 288     P    49 
F 289     N    50 
L 290     A    51 
A 291     V    52 
G 292     A    53 
A 293     A    54 
V 294     G    55 
S 295     L    56 
R 296     R    57 
K 298     L    58 
Q 299     Q    59 
TER
END

