
PFRMAT AL
TARGET T0087
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.58 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1brma1
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1brm_A
M   1     M     1 
S   2     K     2 
K   3     N     3 
I   4     V     4 
L   5     G     5 
V   6     F     6 
F   7     I     7 
G   8     G     8 
H   9     W     9 
Q  10     R    10 
A  16     G    11 
I  17     M    12 
G  18     V    13 
S  19     G    14 
S  20     S    15 
M  21     V    16 
A  22     L    17 
Y  23     M    18 
A  24     Q    19 
Y  25     R    20 
L  26     M    21 
K  27     V    22 
R  28     E    23 
Q  29     E    24 
A 102     R    25 
N 103     D    26 
F 104     F    27 
E 105     D    28 
T 106     A    29 
A 107     I    30 
N 108     R    31 
P 109     P    32 
L 110     V    33 
Y 111     F    34 
M 112     F    35 
R 113     S    36 
L 114     T    37 
E 115     S    38 
P 116     Q    39 
V 117     L    40 
G 118     G    41 
S 119     Q    42 
A 120     A    43 
S 121     A    44 
S 122     P    45 
L 153     S    46 
L 154     F    47 
K 155     G    48 
S 156     G    49 
P 157     T    50 
T 158     T    51 
T 159     G    52 
H 160     T    53 
A 161     L    54 
S 162     Q    55 
D 163     D    56 
P 164     A    57 
A 165     F    58 
V 166     D    59 
A 167     L    60 
E 168     E    61 
D 169     A    62 
L 170     L    63 
A 171     K    64 
K 172     A    65 
I 173     L    66 
A 174     D    67 
L 183     I    68 
A 184     I    69 
M 185     V    70 
L 186     T    71 
K 187     C    72 
A 188     Q    73 
G 189     G    74 
T 190     G    75 
N 191     D    76 
L 192     Y    77 
A 193     T    78 
S 194     N    79 
K 195     E    80 
T 196     I    81 
A 197     Y    82 
A 198     P    83 
Q 199     K    84 
L 200     L    85 
V 201     R    86 
D 202     E    87 
I 203     S    88 
D 204     G    89 
A 205     W    90 
K 206     Q    91 
T 207     G    92 
F 208     Y    93 
E 209     W    94 
L 210     I    95 
N 211     D    96 
G 212     A    97 
S 213     A    98 
Q 214     S    99 
T 256     S   100 
D 257     L   101 
I 258     R   102 
L 259     M   103 
N 260     K   104 
S 261     D   105 
N 262     D   106 
S 263     A   107 
E 264     I   108 
I 265     I   109 
L 266     I   110 
A 267     L   111 
L 268     D   112 
G 269     P   113 
N 270     V   114 
N 271     N   115 
T 272     Q   116 
D 273     D   117 
K 274     V   118 
V 275     I   119 
E 276     T   120 
A 277     D   121 
A 278     G   122 
F 279     L   123 
N 280     N   124 
K 284     N   125 
N 285     G   126 
N 286     I   127 
H 287     R   128 
A 288     T   129 
F 289     F   130 
L 290     V   131 
A 291     G   132 
G 292     G   133 
A 293     A   355 
V 294     A   356 
S 295     E   357 
R 296     P   358 
K 297     L   359 
K 298     R   360 
Q 299     R   361 
V 300     M   362 
V 301     L   363 
P 302     R   364 
Q 303     Q   365 
L 304     L   366 
T 305     A   367 
TER
END

