
PFRMAT AL
TARGET T0087
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1llc
M    1 H 20
S    2 Q 22
K    3 K 23
I    4 V 24
L    5 I 25
V    6 L 26
F    7 V 27
G    8 G 28
D   13 D 29
S   14 G 30
A   16 A 31
I   17 V 32
G   18 G 33
S   19 S 34
S   20 S 35
M   21 Y 36
A   22 A 37
Y   23 F 38
A   24 A 39
Y   25 M 40
L   26 V 41
K   27 L 42
L   30 Q 43
G   31 G 44
V   32 I 45
D   33 A 46
A   34 Q 47
Q   35 E 48
A   36 I 49
V   37 G 50
A   38 I 51
L   39 V 52
G   40 D 53
N   41 I 54
P   42 F 55
N   43 K 56
E   44 D 57
E   45 K 58
T   46 T 59
A   47 K 60
F   48 D 65
V   49 L 66
L   50 S 67
D   51 N 68
Y   52 A 69
F   53 L 70
G   54 P 71
I   55 F 72
Q   56 T 73
A   57 S 74
P   58 P 75
P   59 K 76
V   60 K 77
V   61 I 78
K   62 Y 79
S   63 S 80
A   64 A 81
Q   65 E 84
A   66 Y 85
E   67 S 86
G   68 D 87
A   69 A 88
K   70 K 89
Q   71 D 92
V   72 L 93
I   73 V 94
L   74 V 95
T   75 I 96
D   76 T 97
H   77 A 98
N   78 G 99
E   79 A 100
F   80 P 101
Q   81 K 102
Q   82 Q 103
S   83 P 105
I   84 G 106
A   85 E 107
D   86 V 113
I   87 N 114
R   88 K 115
E   89 N 116
V   90 L 117
E   91 K 118
V   92 I 119
V   93 L 120
E   94 K 121
V   95 I 123
V   96 V 124
D   97 D 125
R  100 P 126
V  101 I 127
A  102 V 128
N  103 D 129
F  104 S 130
E  105 G 131
N  108 F 132A
P  109 N 132B
L  110 L 133
Y  111 I 134
M  112 F 135
R  113 L 136
L  114 V 137
E  115 A 138
V  117 A 139
G  118 N 140
S  119 P 141
A  120 V 142
S  121 D 143
S  122 I 144
I  123 L 145
V  124 T 146
Y  125 Y 147
R  126 A 148
L  127 T 149
Y  128 W 150
K  129 K 151
E  130 L 152
N  131 S 153
G  132 G 154
V  133 F 155
A  134 P 156
T  151 K 157
L  152 N 158
L  153 R 159
L  154 V 160
K  155 V 161
S  156 G 162
P  157 S 163
T  158 G 164
T  159 T 165
H  160 S 166
A  161 L 167
S  162 D 168
D  163 T 169
P  164 A 170
A  165 R 171
V  166 F 172
A  167 R 173
E  168 Q 174
D  169 S 175
L  170 I 176
A  171 A 177
K  172 E 178
I  173 M 179
A  174 V 180
G  175 N 181
V  176 V 182
D  177 D 183
L  178 A 184
Q  179 R 185
E  180 S 186
Y  181 V 187
G  182 H 188
L  183 A 189
A  184 Y 190
M  185 I 191
L  186 M 192
K  187 E 218
A  188 I 219
G  189 K 220
T  190 E 221
N  191 D 222
L  192 K 223
A  193 L 225
S  194 V 226
K  195 K 227
T  196 M 228
A  197 F 229
A  198 E 230
Q  199 D 231
L  200 V 232
V  201 R 233
D  202 D 234
I  203 A 235
D  204 A 236
A  205 Y 237
K  206 E 238
T  207 I 239
F  208 I 240
E  209 K 241
L  210 L 242
N  211 K 243
G  212 G 244
V  223 A 245
D  224 T 246
I  225 F 247
N  226 Y 248
E  227 G 249
V  228 I 250
L  229 A 251
E  230 T 252
R  231 A 253
Q  232 L 254
N  233 A 255
E  234 R 256
I  235 I 257
E  236 S 258
E  237 K 259
A  238 A 260
I  239 I 261
S  242 L 262
Q  243 N 263
A  244 D 264
A  245 E 265
N  246 N 266
G  247 G 288
Y  248 T 289
S  249 P 290
D  250 A 291
F  251 V 292
V  252 I 293
L  253 N 294
M  254 R 295
I  255 I 298
T  256 Q 299
D  257 N 301
I  258 I 302
L  259 L 303
N  260 E 304
S  261 T 308
N  262 D 309
S  263 H 310
E  264 E 311
I  265 E 312
L  266 E 313
A  267 S 314
L  268 M 315
G  269 Q 316
N  270 K 317
N  271 S 318
T  272 A 319
D  273 S 320
K  274 Q 321
V  275 L 322
E  276 K 323
A  277 K 324
A  278 V 325
F  279 L 326
N  280 D 328
F  281 A 329
T  282 F 330A
L  283 A 330B
K  284 K 331
N  285 N 332
N  286 D 333
TER
END

