
PFRMAT AL
TARGET T0087
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1yub
M    1 M 1
S    2 N 2
K    3 K 3
H    9 N 4
Q   10 I 5
N   11 K 6
P   12 Y 7
D   13 S 8
S   14 Q 9
D   15 N 10
A   16 F 11
I   17 L 12
G   18 T 13
S   19 S 14
S   20 E 15
M   21 K 16
A   22 V 17
Y   23 L 18
A   24 N 19
Y   25 Q 20
L   26 I 21
K   27 I 22
R   28 K 23
Q   29 Q 24
L   30 L 25
G   31 N 26
V   32 K 28
D   33 E 29
A   34 T 30
Q   35 D 31
A   36 T 32
V   37 V 33
A   38 Y 34
L   39 I 36
G   40 G 37
N   41 G 39
P   42 K 40
N   43 G 41
E   44 H 42
E   45 L 43
T   46 T 44
A   47 T 45
F   48 K 46
V   49 L 47
L   50 A 48
D   51 K 49
Y   52 I 50
F   53 S 51
G   54 K 52
I   55 I 57
Q   56 E 58
A   57 L 59
P   58 D 60
P   59 S 61
V   60 H 62
V   61 L 63
K   62 F 64
S   63 N 65
A   64 E 69
Q   65 K 70
A   66 L 71
E   67 K 72
G   68 L 73
A   69 N 74
K   70 T 75
Q   71 R 76
V   72 V 77
I   73 T 78
L   74 L 79
T   75 I 80
D   76 H 81
H   77 Q 82
N   78 D 83
E   79 I 84
F   80 L 85
Q   81 Q 86
Q   82 Q 88
S   83 F 89
I   84 P 90
A   85 N 91
D   86 K 92
I   87 Q 93
R   88 R 94
E   89 Y 95
E   91 K 96
V   92 I 97
V   93 V 98
E   94 G 99
V   95 N 100
V   96 I 101
D   97 P 102
H   98 Y 103
H   99 H 104
R  100 L 105
V  101 S 106
A  102 T 107
N  103 F 115
F  104 E 116
E  105 S 117
T  106 R 118
A  107 A 119
N  108 S 120
P  109 D 121
L  110 I 122
Y  111 Y 123
M  112 L 124
R  113 I 125
L  114 V 126
E  115 E 127
R  126 E 128
L  127 G 129
Y  128 F 130
K  129 Y 131
E  130 K 132
N  131 R 133
G  132 T 134
V  133 L 135
A  134 D 136
I  135 I 137
P  136 H 138
K  137 R 139
E  138 T 140
I  139 L 141
A  140 G 142
G  141 L 143
V  142 L 144
M  143 L 145
L  144 L 154
S  145 L 155
G  146 K 156
L  147 L 157
I  148 P 158
S  149 A 159
D  150 E 160
T  151 C 161
L  152 F 162
L  153 H 163
L  154 P 164
K  155 K 165
S  156 P 166
P  157 K 167
T  158 T 179
T  159 T 180
H  160 D 181
A  161 V 182
S  162 P 183
D  163 D 184
P  164 K 185
A  165 Y 186
V  166 Y 190
A  167 T 191
E  168 Y 192
D  169 F 193
L  170 V 194
A  171 S 195
K  172 K 196
I  173 W 197
A  174 V 198
G  175 N 199
V  176 R 200
D  177 E 201
L  178 Y 202
Q  179 R 203
E  180 Q 204
Y  181 F 211
G  182 H 212
L  183 Q 213
A  184 A 214
M  185 M 215
L  186 K 216
K  187 H 217
A  188 A 218
G  189 K 219
T  190 N 221
N  191 N 222
L  192 L 223
A  193 S 224
S  194 T 225
K  195 I 226
T  196 T 227
A  197 Y 228
A  198 E 229
Q  199 Q 230
L  200 V 231
V  201 L 232
D  202 S 233
I  203 I 234
A  205 F 235
K  206 N 236
T  207 S 237
F  208 Y 238
E  209 L 240
L  210 F 241
N  211 N 242
G  212 G 243
S  213 R 244
Q  214 K 245
TER
END

