
PFRMAT AL
TARGET T0087
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1a5z
S   2    M  22
K   3    K  23
I   4    I  24
L   5    G  25
V   6    I  26
F   7    V  27
G   8    G  28
S  14    L  29
D  15    G  30
A  16    R  31
I  17    V  32
G  18    G  33
S  19    S  34
S  20    S  35
M  21    T  36
A  22    A  37
Y  23    F  38
A  24    A  39
Y  25    L  40
L  26    L  41
K  27    M  42
R  28    K  43
Q  29    G  44
L  30    F  45
G  31    A  46
V  32    R  47
D  33    E  48
A  34    M  49
Q  35    V  50
A  36    L  51
V  37    I  52
A  38    D  53
L  39    V  54
G  40    D  55
N  41    K  57
P  42    R  58
N  43    A  59
E  44    E  60
E  45    G  61
T  46    D  62
A  47    A  63
F  48    L  64
V  49    D  65
L  50    L  66
D  51    I  67
Y  52    H  68
F  53    G  69
G  54    T  70
G  68    G  90
A  69    S  91
K  70    D  92
Q  71    V  93
V  72    V  94
I  73    I  95
L  74    V  96
T  75    A  97
D  76    A  98
H  77    G  99
N  78    V 100
E  79    P 101
F  80    Q 102
Q  81    K 103
Q  82    P 105
S  83    G 106
I  84    E 107
V  90    A 117
E  91    R 118
V  92    V 119
V  93    M 120
E  94    K 121
V  95    E 122
V  96    I 123
D  97    A 124
H  98    R 125
H  99    N 126
R 100    V 127
V 101    S 128
A 102    K 129
N 103    Y 130
F 104    A 131
T 106    S 133
A 107    I 134
L 110    V 135
Y 111    I 136
M 112    V 137
R 113    V 138
L 114    T 139
E 115    N 140
P 116    P 141
V 117    V 142
S 121    D 143
S 122    V 144
I 123    L 145
V 124    T 146
Y 125    Y 147
R 126    F 148
L 127    F 149
Y 128    L 150
K 129    K 151
E 130    E 152
N 131    S 153
G 132    G 154
V 133    M 155
A 134    D 156
TER
END


