
PFRMAT AL
TARGET T0087
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1ger_A
K 137    V 180
E 138    E 181
I 139    L 182
A 140    A 183
G 141    G 184
V 142    V 185
M 143    I 186
S 145    N 187
G 146    G 188
L 147    L 189
I 148    G 190
S 149    A 191
D 150    K 192
T 151    T 193
L 152    H 194
L 153    L 195
L 154    F 196
K 155    K 199
S 156    H 200
P 157    A 201
T 158    P 202
T 159    L 203
H 160    R 204
A 161    S 205
S 162    F 206
D 163    D 207
P 164    P 208
A 165    M 209
V 166    I 210
A 167    S 211
E 168    E 212
D 169    T 213
L 170    L 214
A 171    V 215
K 172    E 216
I 173    V 217
A 174    M 218
G 175    N 219
V 176    A 220
D 177    E 221
T 190    T 227
N 191    N 228
L 192    A 229
A 193    I 230
S 194    P 231
K 195    K 232
T 196    A 233
A 197    V 234
A 198    V 235
Q 199    K 236
L 200    N 237
V 201    T 238
D 202    D 239
D 204    G 240
A 205    S 241
K 206    L 242
T 207    T 243
F 208    L 244
E 209    E 245
L 210    L 246
N 211    E 247
G 212    D 248
S 213    G 249
Q 214    R 250
V 215    S 251
R 216    E 252
V 217    T 253
A 218    V 254
I 225    I 261
N 226    G 262
E 227    R 263
V 228    E 264
L 229    P 265
E 230    A 266
R 231    N 267
Q 232    D 268
N 233    N 269
E 234    I 270
I 235    N 271
E 236    L 272
E 237    E 273
A 238    A 274
I 239    A 275
K 240    G 276
A 241    V 277
S 242    K 278
Q 243    T 279
A 244    N 280
A 245    E 281
N 246    K 282
G 247    G 283
Y 248    Y 284
L 253    I 285
M 254    V 286
I 255    V 287
T 256    D 288
D 257    K 289
I 258    Y 290
L 259    Q 291
N 260    N 292
S 261    T 293
N 262    N 294
S 263    I 295
E 264    E 296
I 265    I 298
L 266    Y 299
A 267    A 300
L 268    V 301
G 269    G 302
N 270    D 303
N 271    N 304
T 272    T 305
D 273    G 306
K 274    A 307
V 275    V 308
E 276    E 309
A 277    L 310
TER
END


