
PFRMAT AL
TARGET T0087
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1yag_A
I 173    L 180
A 174    A 181
G 175    G 182
V 176    R 183
D 177    D 184
L 178    L 185
Q 179    T 186
E 180    D 187
Y 181    Y 188
G 182    L 189
L 183    M 190
A 184    K 191
M 185    I 192
L 186    L 193
K 187    S 194
A 188    E 195
G 189    R 196
T 190    G 197
N 191    Y 198
L 192    S 199
A 193    F 200
S 194    S 201
K 195    T 202
T 196    T 203
A 197    A 204
A 198    E 205
Q 199    R 206
L 200    E 207
V 201    I 208
D 202    V 209
I 203    R 210
D 204    D 211
A 205    I 212
K 206    K 213
T 207    E 214
F 208    L 221
E 209    D 222
L 210    F 223
N 211    E 224
G 212    Q 225
S 213    E 226
Q 214    M 227
V 215    Q 228
R 216    T 229
V 217    A 230
A 218    A 231
Q 219    Q 232
V 220    S 233
N 221    S 234
T 222    S 235
V 223    I 236
D 224    E 237
I 225    K 238
N 226    S 239
E 227    Y 240
V 228    E 241
L 229    L 242
E 230    P 243
R 231    D 244
Q 232    G 245
N 233    Q 246
E 234    V 247
I 235    I 248
E 236    T 249
E 237    I 250
A 238    G 251
I 239    N 252
K 240    E 253
A 241    R 254
S 242    F 255
Q 243    R 256
A 244    A 257
A 245    P 258
N 246    E 259
G 247    A 260
Y 248    L 261
S 249    S 265
D 250    V 266
F 251    L 267
V 252    G 268
L 253    L 269
M 254    E 270
I 255    S 271
T 256    A 272
D 257    G 273
I 258    I 274
L 259    D 275
N 260    Q 276
S 261    T 277
N 262    T 278
S 263    Y 279
E 264    N 280
I 265    S 281
L 266    I 282
A 267    M 283
L 268    K 284
G 269    C 285
N 270    D 286
N 271    V 287
T 272    D 288
D 273    V 289
K 274    R 290
V 275    K 291
E 276    E 292
A 277    L 293
A 278    Y 294
F 279    G 295
N 280    N 296
F 281    I 297
T 282    V 298
L 283    M 299
G 292    G 308
A 293    I 309
V 294    A 310
S 295    E 311
R 296    R 312
K 297    M 313
K 298    Q 314
Q 299    K 315
V 300    E 316
V 301    I 317
P 302    T 318
Q 303    A 319
L 304    L 320
TER
END


