
PFRMAT AL
TARGET T0087
AUTHOR 7023-8870-2129
METHOD Additional Information
METHOD New class of PPase. Homologs, B.subtilus swissprot P37487
METHOD M.jannaschii swissprot Q58025
METHOD 
METHOD Using a database which X'ed out sequence regions within coiled-coils,
METHOD transmembrane, and low entropy, SENSER was able to identify a relationship
METHOD between PPase and CHEY FROM THERMOTOGA MARITIMA (4tmyB)
METHOD through trailing end searching. An alignment
METHOD was generated using MACAW and secondary structure information.
METHOD The initial alignment was made based on sequence similarity between
METHOD the target family and the template family. Regions that could
METHOD not be aligned through sequence similarity were aligned through
METHOD conserved hydrophobicity patterns between predicted (for target 
METHOD sequence) and actual (for template) secondary structure elements.
MODEL 1
PARENT 4tmyB
M   1    G   2
S   2    K   3
K   3    R   4
I   4    V   5
L   5    L   6
V   6    I   7
F   7    V   8
G   8    D   9
H   9    D  10
Q  10    A  11
D  15    A  12
A  16    F  13
I  17    M  14
G  18    R  15
S  19    M  16
S  20    M  17
M  21    L  18
A  22    K  19
Y  23    D  20
A  24    I  21
Y  25    I  22
L  26    T  23
K  27    K  24
R  28    A  25
Q  29    G  26
A  34    Y  27
Q  35    E  28
A  36    V  29
V  37    A  30
A  38    G  31
L  39    E  32
G  40    A  33
N  41    T  34
E  45    N  35
T  46    G  36
A  47    R  37
F  48    E  38
V  49    A  39
L  50    V  40
D  51    E  41
Y  52    K  42
F  53    Y  43
G  54    K  44
I  55    E  45
Q  56    L  46
A  57    K  47
K  70    P  48
Q  71    D  49
V  72    I  50
I  73    V  51
L  74    T  52
T  75    M  53
D  76    D  54
H  77    I  55
N  78    T  56
E  79    M  57
F  80    G  62
Q  81    I  63
Q  82    D  64
S  83    A  65
I  84    I  66
A  85    K  67
D  86    E  68
I  87    I  69
R  88    M  70
E  89    K  71
V  90    I  72
E  91    K  77
V  92    I  78
V  93    I  79
E  94    V  80
V  95    C  81
V  96    S  82
D  97    A  83
H  98    M  84
H  99    Q  86
R 100    Q  87
V 101    A  88
A 102    M  89
N 103    V  90
F 104    I  91
E 105    E  92
T 106    A  93
A 107    I  94
N 108    K  95
P 109    A  96
L 110    G  97
Y 111    A  98
M 112    K  99
R 113    D 100
L 114    F 101
E 115    I 102
P 116    V 103
V 117    K 104
G 118    P 105
S 119    Q 107
A 120    P 108
S 121    S 109
S 122    R 110
I 123    V 111
V 124    V 112
Y 125    E 113
R 126    A 114
L 127    L 115
Y 128    N 116
K 129    K 117
E 130    V 118
N 131    S 119
TER
END

