
PFRMAT SS
TARGET T0087
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0087.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 27.6601
METHOD
MODEL 1
M C 0.906
S C 0.773
K C 0.548
I E 0.902
L E 0.980
V E 0.986
F E 0.971
G E 0.839
H C 0.509
Q C 0.770
N C 0.890
P C 0.919
D C 0.968
S H 0.745
D H 0.847
A H 0.926
I H 0.965
G H 0.978
S H 0.989
S H 0.992
M H 0.995
A H 0.997
Y H 0.994
A H 0.996
Y H 0.990
L H 0.978
K H 0.963
R H 0.910
Q H 0.847
L H 0.512
G C 0.946
V C 0.901
D C 0.745
A C 0.531
Q E 0.786
A E 0.909
V E 0.858
A E 0.720
L C 0.645
G C 0.808
N C 0.840
P C 0.812
N C 0.775
E H 0.531
E H 0.614
T H 0.754
A H 0.799
F H 0.810
V H 0.834
L H 0.832
D H 0.790
Y H 0.754
F H 0.620
G C 0.721
I C 0.757
Q C 0.763
A C 0.814
P C 0.755
P C 0.634
V C 0.455
V E 0.531
K C 0.509
S C 0.846
A C 0.495
Q C 0.521
A C 0.642
E C 0.768
G C 0.851
A C 0.840
K C 0.686
Q E 0.842
V E 0.975
I E 0.996
L E 0.994
T E 0.906
D C 0.592
H C 0.940
N C 0.929
E C 0.848
F C 0.755
Q C 0.677
Q C 0.584
S C 0.522
I C 0.479
A C 0.539
D C 0.583
I C 0.535
R C 0.609
E C 0.702
V C 0.776
E C 0.609
V E 0.736
V E 0.913
E E 0.976
V E 0.976
V E 0.886
D C 0.562
H C 0.915
H C 0.929
R C 0.840
V C 0.865
A C 0.862
N C 0.829
F C 0.733
E C 0.645
T C 0.667
A C 0.726
N C 0.785
P C 0.748
L C 0.544
Y C 0.397
M E 0.550
R E 0.477
L C 0.526
E C 0.702
P C 0.705
V C 0.649
G C 0.805
S H 0.446
A H 0.891
S H 0.978
S H 0.991
I H 0.994
V H 0.996
Y H 0.998
R H 0.997
L H 0.993
Y H 0.993
K H 0.985
E H 0.961
N H 0.868
G C 0.920
V C 0.940
A C 0.922
I C 0.898
P C 0.921
K H 0.961
E H 0.981
I H 0.995
A H 0.992
G H 0.994
V H 0.992
M H 0.987
L H 0.985
S H 0.973
G H 0.926
L H 0.854
I H 0.784
S H 0.625
D H 0.437
T C 0.511
L C 0.515
L C 0.536
L C 0.639
K C 0.772
S C 0.880
P C 0.883
T C 0.906
T C 0.905
H C 0.965
A H 0.860
S H 0.897
D H 0.943
P H 0.989
A H 0.992
V H 0.995
A H 0.990
E H 0.991
D H 0.983
L H 0.954
A H 0.933
K H 0.878
I H 0.806
A H 0.531
G C 0.901
V C 0.956
D C 0.949
L H 0.935
Q H 0.972
E H 0.987
Y H 0.985
G H 0.984
L H 0.985
A H 0.978
M H 0.957
L H 0.897
K H 0.861
A H 0.733
G H 0.560
T C 0.598
N C 0.563
L C 0.512
A H 0.487
S H 0.492
K H 0.470
T H 0.488
A H 0.907
A H 0.935
Q H 0.947
L H 0.950
V H 0.945
D H 0.941
I H 0.939
D H 0.917
A H 0.883
K H 0.831
T H 0.722
F H 0.568
E H 0.380
L C 0.379
N C 0.664
G C 0.760
S E 0.538
Q E 0.806
V E 0.858
R E 0.879
V E 0.888
A E 0.901
Q E 0.940
V E 0.930
N E 0.907
T E 0.810
V E 0.605
D C 0.562
I H 0.662
N H 0.804
E H 0.887
V H 0.873
L H 0.891
E H 0.868
R H 0.860
Q H 0.827
N H 0.783
E H 0.772
I H 0.838
E H 0.899
E H 0.930
A H 0.946
I H 0.962
K H 0.971
A H 0.975
S H 0.966
Q H 0.953
A H 0.931
A H 0.860
N H 0.612
G C 0.856
Y C 0.894
S C 0.784
D E 0.543
F E 0.880
V E 0.975
L E 0.995
M E 0.997
I E 0.996
T E 0.982
D E 0.926
I E 0.771
L E 0.534
N C 0.703
S C 0.894
N C 0.889
S C 0.636
E E 0.731
I E 0.909
L E 0.956
A E 0.952
L E 0.897
G E 0.601
N C 0.852
N C 0.899
T C 0.714
D C 0.490
K H 0.453
V H 0.912
E H 0.960
A H 0.966
A H 0.952
F H 0.950
N H 0.926
F H 0.873
T H 0.711
L C 0.847
K C 0.883
N C 0.809
N C 0.526
H H 0.447
A H 0.411
F E 0.359
L E 0.389
A C 0.472
G C 0.714
A E 0.490
V E 0.630
S E 0.658
R C 0.484
K C 0.543
K E 0.486
Q E 0.512
V H 0.393
V H 0.617
P H 0.859
Q H 0.910
L H 0.935
T H 0.949
E H 0.932
S H 0.921
F H 0.845
N H 0.584
G C 0.950
END

