
PFRMAT SS
TARGET T0087
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.98
S C 0.51
K E 0.22
I E 0.88
L E 0.96
V E 0.94
F E 0.95
G E 0.57
H C 0.55
Q C 0.90
N C 0.92
P C 0.86
D C 0.90
S H 0.59
D H 0.48
A H 0.72
I H 0.90
G H 0.93
S H 0.95
S H 0.97
M H 0.97
A H 0.97
Y H 0.96
A H 0.96
Y H 0.96
L H 0.96
K H 0.94
R H 0.91
Q H 0.59
L H 0.03
G C 0.91
V C 0.91
D C 0.87
A C 0.55
Q C 0.43
A E 0.80
V E 0.90
A E 0.78
L C 0.18
G C 0.84
N C 0.86
P C 0.54
N C 0.51
E H 0.24
E H 0.32
T H 0.62
A H 0.86
F H 0.88
V H 0.90
L H 0.91
D H 0.88
Y H 0.67
F C 0.14
G C 0.72
I C 0.73
Q C 0.56
A C 0.40
P C 0.41
P C 0.33
V C 0.16
V C 0.04
K C 0.09
S C 0.15
A C 0.62
Q C 0.78
A C 0.69
E C 0.74
G C 0.83
A C 0.80
K C 0.33
Q E 0.77
V E 0.92
I E 0.95
L E 0.94
T E 0.83
D E 0.45
H C 0.85
N C 0.84
E C 0.67
F H 0.48
Q H 0.62
Q H 0.16
S C 0.76
I H 0.60
A H 0.42
D H 0.04
I H 0.32
R H 0.30
E H 0.09
V C 0.64
E C 0.87
V C 0.48
V E 0.66
E E 0.95
V E 0.94
V E 0.91
D E 0.29
H C 0.71
H C 0.80
R C 0.75
V C 0.71
A C 0.82
N C 0.91
F C 0.91
E C 0.83
T C 0.80
A C 0.59
N C 0.66
P C 0.49
L C 0.10
Y E 0.37
M E 0.44
R E 0.24
L C 0.13
E C 0.82
P C 0.80
V C 0.64
G C 0.41
S H 0.19
A H 0.77
S H 0.89
S H 0.93
I H 0.96
V H 0.96
Y H 0.96
R H 0.96
L H 0.96
Y H 0.94
K H 0.92
E H 0.70
N C 0.59
G C 0.92
V C 0.92
A C 0.91
I C 0.86
P C 0.93
K H 0.82
E H 0.91
I H 0.93
A H 0.96
G H 0.95
V H 0.95
M H 0.97
L H 0.97
S H 0.95
G H 0.91
L H 0.92
I H 0.83
S H 0.44
D H 0.18
T H 0.09
L C 0.07
L C 0.32
L C 0.46
K C 0.67
S C 0.70
P C 0.93
T C 0.82
T C 0.88
H C 0.90
A C 0.24
S C 0.02
D H 0.41
P H 0.90
A H 0.89
V H 0.93
A H 0.95
E H 0.95
D H 0.95
L H 0.92
A H 0.84
K H 0.59
I H 0.48
A C 0.27
G C 0.94
V C 0.90
D C 0.91
L H 0.85
Q H 0.96
E H 0.96
Y H 0.95
G H 0.96
L H 0.95
A H 0.96
M H 0.93
L H 0.86
K H 0.59
A H 0.01
G H 0.01
T C 0.55
N C 0.46
L C 0.42
A C 0.48
S C 0.26
K C 0.41
T C 0.66
A H 0.84
A H 0.89
Q H 0.88
L H 0.93
V H 0.87
D H 0.71
I H 0.60
D H 0.57
A H 0.56
K H 0.43
T H 0.16
F C 0.14
E C 0.23
L C 0.34
N C 0.87
G C 0.81
S E 0.76
Q E 0.91
V E 0.74
R E 0.64
V E 0.50
A E 0.34
Q E 0.38
V E 0.70
N E 0.81
T E 0.59
V E 0.30
D C 0.01
I H 0.82
N H 0.84
E H 0.87
V H 0.79
L H 0.18
E C 0.14
R H 0.02
Q H 0.75
N H 0.89
E H 0.90
I H 0.88
E H 0.96
E H 0.96
A H 0.96
I H 0.96
K H 0.96
A H 0.95
S H 0.92
Q H 0.86
A H 0.63
A H 0.21
N C 0.58
G C 0.85
Y C 0.59
S C 0.36
D E 0.71
F E 0.93
V E 0.94
L E 0.97
M E 0.97
I E 0.96
T E 0.76
D E 0.24
I E 0.15
L C 0.01
N C 0.72
S C 0.87
N C 0.68
S C 0.06
E E 0.31
I E 0.87
L E 0.85
A E 0.91
L E 0.84
G C 0.48
N C 0.82
N C 0.41
T H 0.71
D H 0.87
K H 0.86
V H 0.80
E H 0.79
A H 0.79
A H 0.57
F H 0.06
N C 0.88
F C 0.89
T C 0.80
L C 0.57
K C 0.58
N C 0.80
N C 0.72
H E 0.70
A E 0.88
F E 0.78
L E 0.16
A C 0.40
G C 0.42
A C 0.02
V H 0.01
S H 0.06
R H 0.10
K H 0.35
K C 0.30
Q C 0.55
V C 0.71
V C 0.72
P C 0.76
Q C 0.72
L H 0.52
T H 0.17
E H 0.62
S H 0.48
F C 0.29
N C 0.85
G C 0.96
END

