
PFRMAT AL
TARGET T0088
AUTHOR 7770-2312-5826
REMARK GROUP NAME: SHESTOPALOV
REMARK GROUP LEADER: Shestopalov Boris V.
REMARK E-mail: shest@mail.cytspb.rssi.ru
METHOD Secondary structures predicted by DOUBLET CODE METHOD
METHOD (see SHESTOPALOV, ab initio secondary structure category)
METHOD and also various information from protein data bases.
METHOD Here visual inspection of relevant entries from PDB
METHOD is used in confront with the Double Code prediction of T0088.  
MODEL  2
PARENT 1qpx_A
A   1  A   1    
V   2  V   2
S   3  S   3
F   4  L   4
G   6  D   5
S   7  R   6
T   8  T   7
E   9  R   8
N  10  A   9
D  11  V  10
V  12  F  11
G  13  D  12
P  14  G  13
S  15  S  14
Q  16  E  15
G  17  K  16
S  18  S  17
Y  19  M  18
S  20  T  19
S  21  L  20
T  22  D  21
H  23  I  22
A  24  S  23
M  25  N  24
D  26  D  25
N  27  N  26
L  28  L  29
P  29  P  30
F  30  Y  31
V  31  L  32
Y  32  A  33
N  33  Q  34
T  34  A  35
Y  36  W  36
I  38  I  37
Q  41  E  38
N  42  N  39
A  43  E  40
N  44  N  41
V  45  Q  42
W  46  E  43
R  47  K  44
I  48  I  46
S  49  T  47
G  50  G  48
G  51  P  49
F  52  V  50
C  53  I  51
V  54  A  52
G  55  T  53
L  56  P  54
D  57  P  55
K  59  V  56
V  60  Q  57
D  61  R  58
L  62  L  59
P  63  D  60
V  64  M  66
V  65  V  67
G  66  R  68
S  67  L  69
L  68  S  70
D  69  T  71
G  70  T  72
Q  71  P  73
S  72  D  74
I  73  I  75
Y  74  S  76
G  75  K  77
L  76  L  78
T  77  P  79
E  78  Q  80
E  79  D  81
V  80  R  82
G  81  E  83
L  82  S  84
L  83  L  85
I  84  F  86
W  85  Y  87
M  86  F  88
G  87  N  89
D  88  L  90
T  89  R  91
N  90  E  92
Y  91  I  93
S  92  P  95
N 104  A 106
V 105  L 107
F 106  C 108
S 107  T 109
W 109  K 110
C 110  I 111
V 111  K 112
V 115  L 113
S 116  F 114
T 117  Y 115
Q 118  R 116
G 119  P 117
L 120  A 118
S 121  A 119
V 122  I 120
H 123  K 121
V 124  T 122
R 125  R 123
P 126  P 124
I 128  N 125
L 129  E 126
K 130  V 127
R 131  W 128
N 132  Q 129
S 133  D 130
S 134  Q 131
A 135  L 132
Q 136  I 133
Y 137  L 134
S 138  N 135
Q 140  K 136
K 141  V 137
T 142  S 138
G 145  G 139
S 146  G 140
I 147  Y 141
R 148  R 142
M 149  I 143
R 150  E 144
P 151  P 146
Y 152  T 147
N 153  P 148
G 154  G 157
S 155  G 158
S 156  S 159  
TER
END

