
PFRMAT AL
TARGET T0088
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=3.87 
REMARK CONFIDENCE: GUESS     (50% confidence [ ZSCORE>=3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: FN2
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  1
PARENT 1pdc
D  11     D    -4 
V  12     Y    -3 
A  24     A    -2 
M  25     K    -1 
D  26     C     1 
N  27     V     2 
L  28     F     3 
P  29     P     4 
F  30     F     5 
V  31     I     6 
Y  32     Y     7 
G  87     G     8 
D  88     G     9 
T  89     K    10 
N  90     K    11 
Y  91     Y    12 
S  92     E    13 
R  93     T    14 
G  94     C    15 
T  95     T    16 
A  96     K    17 
M  97     I    18 
S  98     G    19 
G  99     S    20 
N 100     M    21 
W 102     W    23 
E 103     M    24 
N 104     S    25 
W 109     W    26 
C 110     C    27 
V 111     S    28 
Q 140     L    29 
K 141     S    30 
T 142     P    31 
S 143     N    32 
I 144     Y    33 
G 145     D    34 
S 146     K    35 
I 147     D    36 
R 148     R    37 
M 149     A    38 
R 150     W    39 
P 151     K    40 
Y 152     Y    41 
N 153     C    42 
TER
END

