
PFRMAT AL
TARGET T0088
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.74 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1ay7b
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and environment-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  4
PARENT 1ay7_B
A   1     K     1 
V   2     K     2 
S   3     A     3 
F   4     V     4 
I   5     I     5 
G   6     N     6 
S   7     G     7 
T   8     E     8 
E   9     Q     9 
N  10     I    10 
P  14     R    11 
S  15     S    12 
Q  16     I    13 
G  17     S    14 
S  18     D    15 
Y  19     L    16 
S  20     H    17 
S  21     Q    18 
T  22     T    19 
H  23     L    20 
A  24     K    21 
M  25     K    22 
D  26     E    23 
N  27     A    25 
L  28     L    26 
P  29     P    27 
F  30     E    28 
V  31     Y    29 
Y  32     Y    30 
G  39     G    31 
Y  40     E    32 
Q  41     N    33 
N  42     L    34 
A  43     D    35 
N  44     A    36 
V  45     L    37 
W  46     W    38 
R  47     D    39 
I  48     C    40 
S  49     L    41 
G  50     T    42 
G  51     G    43 
F  52     W    44 
V  60     V    45 
D  61     E    46 
L  62     Y    47 
P  63     P    48 
I  84     L    49 
W  85     V    50 
M  86     L    51 
G  87     E    52 
D  88     W    53 
T  89     R    54 
N  90     Q    55 
Y  91     F    56 
S  92     E    57 
R  93     Q    58 
G  94     S    59 
T  95     K    60 
A  96     Q    61 
M  97     L    62 
S  98     T    63 
G  99     E    64 
N 100     N    65 
S 101     G    66 
W 102     A    67 
E 103     E    68 
N 104     S    69 
V 105     V    70 
F 106     L    71 
S 107     Q    72 
G 108     V    73 
W 109     F    74 
N 113     R    75 
Y 114     E    76 
V 115     A    77 
S 116     K    78 
T 117     A    79 
Q 118     E    80 
G 119     G    81 
L 120     C    82 
S 121     D    83 
V 122     I    84 
H 123     T    85 
V 124     I    86 
R 125     I    87 
P 126     L    88 
S 156     S    89 
TER
END

