

PFRMAT AL
TARGET T0088
AUTHOR 9885-9936-6780
METHOD Smith-Waterman alignment of
METHOD secondary structure annotated
METHOD sequence.
MODEL 1
PARENT 1xyn
A   24   A    1
M   25   S    2
D   26   I    3
N   27   N    4
L   28   Y    5
P   29   D    6
F   30   Q    7
V   31   N    8
Y   32   Y    9
N   33   Q   10
T   34   T   11
G   35   G   12
Y   36   G   13
N   37   Q   14
I   38   V   15
G   39   S   16
Y   40   Y   17
Q   41   S   20
N   42   N   21
A   43   T   22
N   44   S   25
V   45   V   26
W   46   W   28
R   47   N   29
I   48   T   30
S   49   Q   31
G   50   D   32
G   51   D   33
F   52   F   34
C   53   V   35
V   54   V   36
G   55   G   37
L   56   W   40
D   57   T   41
G   58   G   43
K   59   S   44
V   60   I   48
D   61   N   49
L   62   F   50
P   63   G   51
V   64   G   52
V   65   S   53
G   66   F   54
S   67   S   55
L   68   N   57
D   69   S   58
G   70   G   59
Q   71   T   60
S   72   G   61
I   73   L   62
Y   74   Y   66
G   75   G   67
L   76   W   68
T   77   T   70
E   78   V   74
E   79   E   75
V   80   Y   76
G   81   Y   77
L   82   I   78
L   83   M   79
I   84   E   80
W   85   D   81
M   86   N   82
G   87   N   84
D   88   Y   85
T   89   P   86
N   90   A   87
Y   91   Q   88
R   93   K   92
G   94   G   93
T   95   T   94
A   96   V   95
M   97   T   96
S   98   S   97
G   99   D   98
N  100   G   99
S  101   A  100
W  102   T  101
E  103   Y  102
N  104   T  103
V  105   I  104
F  106   W  105
S  107   E  106
G  108   N  107
W  109   T  108
C  110   R  109
V  111   V  110
N  113   N  111
Y  114   E  112
V  115   P  113
S  116   S  114
T  117   I  115
G  119   Q  116
L  120   G  117
S  121   T  118
V  122   A  119
H  123   T  120
V  124   F  121
R  125   N  122
P  126   Q  123
V  127   Y  124
I  128   I  125
L  129   S  126
K  130   V  127
R  131   R  128
N  132   N  129
S  133   S  130
S  134   P  131
A  135   T  133
Q  136   S  134
Y  137   G  135
S  138   T  136
V  139   V  137
TER
END
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Ajay K. Royyuru, PhD                   Phone: (914) 945-1335
Manager, Structural Biology            Fax: (914) 945-4104
Computational Biology Center          mailto:ajayr@us.ibm.com
IBM Research                                 --- IBM Internal ---
T. J. Watson Research Center           Phone: T/L 862-1335
P.O. Box 218, Route 134                  Fax: T/L 862-4104
Yorktown Heights, NY 10598            Office: 13-106D


