
PFRMAT AL
TARGET T0088
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 2cna
G  13    F 111
P  14    T 112
S  15    S 113
Q  16    K 114
G  17    L 115
S  18    K 116
Y  19    S 117
S  20    N 118
S  21    S 119
T  22    T 120
H  23    H 121
A  24    Q 122
M  25    T 123
D  26    D 124
N  27    A 125
L  28    L 126
P  29    H 127
F  30    F 128
V  31    M 129
Y  32    F 130
N  33    N 131
T  34    Q 132
Y  36    F 133
N  37    S 134
I  38    K 135
G  39    D 136
Y  40    Q 137
Q  41    K 138
N  42    D 139
I  48    L 142
S  49    Q 143
G  50    G 144
G  51    D 145
F  52    A 146
C  53    T 147
V  54    T 148
G  55    G 149
L  56    T 150
D  57    D 151
G  58    G 152
K  59    N 153
V  60    L 154
D  61    E 155
L  62    L 156
P  63    T 157
V  64    R 158
V  65    V 159
G  66    G 163
S  67    S 164
L  68    P 165
D  69    E 166
G  70    G 167
Q  71    S 168
S  72    S 169
I  73    V 170
Y  74    G 171
G  75    R 172
V  80    A 177
G  81    P 178
L  82    V 179
L  83    H 180
I  84    I 181
W  85    W 182
M  86    E 183
G  87    S 184
D  88    S 185
T  89    A 186
N  90    T 187
Y  91    V 188
S  92    S 189
R  93    A 190
TER
END


